Protein–RNA interactions for Protein: Q9D5Y1

Ccdc39, Coiled-coil domain-containing protein 39, mousemouse

Predictions only

Length 937 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc39Q9D5Y1 Vmn1r3-201ENSMUST00000105159 1011 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 Gm14333-201ENSMUST00000130484 264 ntBASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 Gm15961-201ENSMUST00000156090 266 ntTSL 3 BASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 Gm20450-201ENSMUST00000173652 147 ntBASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 Vmn2r-ps80-201ENSMUST00000173697 914 ntBASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 Gm27007-201ENSMUST00000183264 279 ntTSL 3 BASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 Mir7062-201ENSMUST00000185038 66 ntBASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 Gm37353-201ENSMUST00000194497 313 ntBASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 Gm43355-201ENSMUST00000196541 346 ntBASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 AC155839.1-201ENSMUST00000200105 147 ntBASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 Gm43264-201ENSMUST00000202284 325 ntBASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 Gm45614-201ENSMUST00000209994 721 ntBASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 AC152979.1-201ENSMUST00000218214 289 ntBASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 AC138027.1-201ENSMUST00000218324 472 ntTSL 5 BASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 CT010455.1-201ENSMUST00000218579 413 ntBASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 AC152951.1-201ENSMUST00000218907 266 ntBASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 Olfr914-201ENSMUST00000057755 951 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 Gm24921-201ENSMUST00000083024 107 ntBASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 Gm23264-201ENSMUST00000083372 107 ntBASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 1110057P08Rik-201ENSMUST00000089097 465 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 Vmn1r76-202ENSMUST00000226300 8189 ntAPPRIS ALT2 BASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 Olfr1229-203ENSMUST00000214593 3404 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
Ccdc39Q9D5Y1 Rgs13-202ENSMUST00000111941 1545 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Rgs18-201ENSMUST00000027603 2031 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 CT009504.1-201ENSMUST00000218252 3330 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm13454-201ENSMUST00000118166 483 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm14469-201ENSMUST00000118363 202 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm14669-201ENSMUST00000118841 250 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Spink2-203ENSMUST00000121825 643 ntAPPRIS ALT2 TSL 3 BASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm22957-201ENSMUST00000122511 123 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm15241-201ENSMUST00000125700 474 ntTSL 3 BASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm15632-201ENSMUST00000135936 246 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm16351-201ENSMUST00000142008 250 ntTSL 3 BASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm14651-201ENSMUST00000147192 442 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm22225-201ENSMUST00000157358 278 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Hmgb3-ps-201ENSMUST00000162465 601 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm15564-202ENSMUST00000173605 402 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Vmn1r-ps61-201ENSMUST00000173771 822 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm27161-201ENSMUST00000183960 562 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm7837-201ENSMUST00000190873 412 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm38075-201ENSMUST00000191979 920 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm37175-201ENSMUST00000192023 587 ntTSL 5 BASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm37807-201ENSMUST00000194310 190 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm43991-201ENSMUST00000203751 274 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm18414-201ENSMUST00000210858 694 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm45344-201ENSMUST00000211610 341 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Olfr953-ps1-201ENSMUST00000214463 892 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 AC174457.1-201ENSMUST00000215932 226 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 AC140785.1-201ENSMUST00000217782 383 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 AC112274.2-201ENSMUST00000218436 170 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm4921-201ENSMUST00000219804 992 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Gm31849-201ENSMUST00000220306 375 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 AC140285.1-201ENSMUST00000220472 452 ntTSL 3 BASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 AC130823.2-201ENSMUST00000226169 290 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 AC112972.1-201ENSMUST00000227329 365 ntBASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Vmn2r71-201ENSMUST00000172338 2568 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 Vmn2r68-201ENSMUST00000061074 2556 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
Ccdc39Q9D5Y1 AC124426.1-203ENSMUST00000221814 1362 ntBASIC3.09□□□□□ -1.92
Ccdc39Q9D5Y1 Olfr1225-202ENSMUST00000216961 3231 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Olfr726-204ENSMUST00000215105 1752 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm13136-201ENSMUST00000121031 2950 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm24670-201ENSMUST00000104154 132 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm22658-201ENSMUST00000104196 155 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm22674-201ENSMUST00000104413 131 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Tas2r122-201ENSMUST00000105077 930 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Mir467h-201ENSMUST00000116759 121 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm26473-201ENSMUST00000116763 127 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm14358-201ENSMUST00000118458 403 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm14906-201ENSMUST00000119265 390 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm15030-201ENSMUST00000119804 484 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm5646-201ENSMUST00000120568 714 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm12770-201ENSMUST00000121734 462 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm17183-201ENSMUST00000171170 493 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm20689-201ENSMUST00000176033 279 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Mir7013-201ENSMUST00000183540 72 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm27599-201ENSMUST00000183758 174 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Mir6383-201ENSMUST00000184545 116 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gtpbp4-ps6-201ENSMUST00000198160 292 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Olfr428-ps1-201ENSMUST00000201135 466 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm44520-201ENSMUST00000205447 802 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm44519-201ENSMUST00000206486 122 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm45427-201ENSMUST00000209572 1253 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm45240-201ENSMUST00000211437 674 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm45587-201ENSMUST00000211548 765 ntTSL 5 BASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm45879-201ENSMUST00000212521 392 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 AC157017.2-201ENSMUST00000218354 777 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 AC139754.1-201ENSMUST00000219418 950 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 9130015A21Rik-201ENSMUST00000221491 651 ntTSL 2 BASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 AC165146.1-201ENSMUST00000223777 900 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Mucl1-201ENSMUST00000078842 621 ntAPPRIS ALT2 BASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm26494-201ENSMUST00000083154 143 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm26128-201ENSMUST00000083170 110 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm24493-201ENSMUST00000083805 143 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm23847-201ENSMUST00000083829 110 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Gm45872-201ENSMUST00000209804 1584 ntBASIC3.08□□□□□ -1.92
Ccdc39Q9D5Y1 Hif1a-202ENSMUST00000110461 4385 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
Ccdc39Q9D5Y1 Ifi203-201ENSMUST00000042228 3754 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
Ccdc39Q9D5Y1 AC125223.3-201ENSMUST00000223588 2067 ntBASIC3.07□□□□□ -1.92
Ccdc39Q9D5Y1 Mir542-201ENSMUST00000102186 85 ntBASIC3.07□□□□□ -1.92
Ccdc39Q9D5Y1 Rpl30-ps3-201ENSMUST00000117928 348 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 76,532 protein–RNA pairs in 95 ms