Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Vmn1r45-205ENSMUST00000227571 2757 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Rps15a-ps7-201ENSMUST00000117430 392 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Gm12118-201ENSMUST00000119766 532 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Gm15807-201ENSMUST00000119880 1128 ntBASIC3.39□□□□□ -1.87
ShhQ62226 AA413626-201ENSMUST00000121125 494 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Gm13419-201ENSMUST00000121711 271 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Gm11534-201ENSMUST00000125956 204 ntTSL 3 BASIC3.39□□□□□ -1.87
ShhQ62226 Rpl30-206ENSMUST00000142643 505 ntTSL 2 BASIC3.39□□□□□ -1.87
ShhQ62226 Gm8289-201ENSMUST00000144814 1182 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Gm25341-201ENSMUST00000157461 268 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Gm25490-201ENSMUST00000158734 130 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Gm17148-201ENSMUST00000164702 249 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Gm23152-201ENSMUST00000175322 116 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Vmn2r-ps33-201ENSMUST00000175691 904 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Gm22108-201ENSMUST00000177961 106 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Gm23191-201ENSMUST00000179147 107 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Gm24798-201ENSMUST00000179334 106 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Gm27580-201ENSMUST00000183666 149 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Gm29330-201ENSMUST00000190032 699 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Igkv15-97-201ENSMUST00000197637 339 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Gm18540-201ENSMUST00000204025 526 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Gm18423-201ENSMUST00000205144 1074 ntBASIC3.39□□□□□ -1.87
ShhQ62226 5430401H09Rik-201ENSMUST00000218145 1076 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
ShhQ62226 AC135019.1-201ENSMUST00000219949 307 ntBASIC3.39□□□□□ -1.87
ShhQ62226 AC162934.1-201ENSMUST00000222880 309 ntBASIC3.39□□□□□ -1.87
ShhQ62226 Zfp442-202ENSMUST00000185796 1833 ntTSL 5 BASIC3.39□□□□□ -1.87
ShhQ62226 Gm14443-201ENSMUST00000109054 4516 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
ShhQ62226 Vmn1r66-205ENSMUST00000228622 3304 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
ShhQ62226 Adam29-201ENSMUST00000053441 2726 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
ShhQ62226 Vmn2r-ps69-201ENSMUST00000173382 2565 ntBASIC3.38□□□□□ -1.87
ShhQ62226 Olfr677-202ENSMUST00000213204 3227 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
ShhQ62226 Gemin6-ps-201ENSMUST00000120444 501 ntBASIC3.38□□□□□ -1.87
ShhQ62226 n-R5s80-201ENSMUST00000122596 111 ntBASIC3.38□□□□□ -1.87
ShhQ62226 Gm16327-201ENSMUST00000137146 228 ntBASIC3.38□□□□□ -1.87
ShhQ62226 Gm24976-201ENSMUST00000158972 135 ntBASIC3.38□□□□□ -1.87
ShhQ62226 Gm16569-201ENSMUST00000160526 314 ntBASIC3.38□□□□□ -1.87
ShhQ62226 Vmn1r-ps68-201ENSMUST00000174638 399 ntBASIC3.38□□□□□ -1.87
ShhQ62226 Gm20656-201ENSMUST00000176925 518 ntBASIC3.38□□□□□ -1.87
ShhQ62226 Gm13698-201ENSMUST00000178325 732 ntTSL 5 BASIC3.38□□□□□ -1.87
ShhQ62226 Esp4-201ENSMUST00000178498 553 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
ShhQ62226 Gm13694-202ENSMUST00000178655 732 ntTSL 5 BASIC3.38□□□□□ -1.87
ShhQ62226 Gm13696-201ENSMUST00000179311 732 ntTSL 5 BASIC3.38□□□□□ -1.87
ShhQ62226 Gm13693-202ENSMUST00000179448 732 ntTSL 5 BASIC3.38□□□□□ -1.87
ShhQ62226 Gm13695-202ENSMUST00000179504 732 ntTSL 5 BASIC3.38□□□□□ -1.87
ShhQ62226 Gm13697-202ENSMUST00000179552 732 ntTSL 5 BASIC3.38□□□□□ -1.87
ShhQ62226 2010005H15Rik-203ENSMUST00000187742 466 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
ShhQ62226 Gm37001-201ENSMUST00000193377 190 ntBASIC3.38□□□□□ -1.87
ShhQ62226 Gm37431-201ENSMUST00000195102 111 ntBASIC3.38□□□□□ -1.87
ShhQ62226 Gm42832-201ENSMUST00000196361 745 ntBASIC3.38□□□□□ -1.87
ShhQ62226 Gm43155-201ENSMUST00000202661 494 ntBASIC3.38□□□□□ -1.87
ShhQ62226 4930402F11Rik-203ENSMUST00000208289 606 ntTSL 3 BASIC3.38□□□□□ -1.87
ShhQ62226 Gm45101-201ENSMUST00000208327 232 ntBASIC3.38□□□□□ -1.87
ShhQ62226 Gm45772-201ENSMUST00000212961 240 ntBASIC3.38□□□□□ -1.87
ShhQ62226 CAAA01090811.1-201ENSMUST00000216828 277 ntBASIC3.38□□□□□ -1.87
ShhQ62226 Olfr474-201ENSMUST00000054434 933 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
ShhQ62226 Olfr937-201ENSMUST00000055567 936 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
ShhQ62226 Zmym2-201ENSMUST00000022511 6974 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
ShhQ62226 Syne2-210ENSMUST00000143031 21704 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
ShhQ62226 Nebl-207ENSMUST00000132418 1734 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
ShhQ62226 Olfr652-203ENSMUST00000216131 4773 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
ShhQ62226 Gm44164-201ENSMUST00000203605 2561 ntBASIC3.38□□□□□ -1.87
ShhQ62226 Olfr1028-201ENSMUST00000080698 3474 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
ShhQ62226 Gm7470-201ENSMUST00000194219 2095 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Gpr34-201ENSMUST00000041708 2088 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
ShhQ62226 Olfr747-204ENSMUST00000213238 1416 ntAPPRIS P1 TSL 3 BASIC3.37□□□□□ -1.87
ShhQ62226 Cd46-203ENSMUST00000162650 6288 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
ShhQ62226 Gmnc-201ENSMUST00000089832 4083 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
ShhQ62226 Ssxb8-201ENSMUST00000101690 518 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
ShhQ62226 Btf3l4-201ENSMUST00000102739 723 ntAPPRIS P1 TSL 3 BASIC3.37□□□□□ -1.87
ShhQ62226 Gm26147-201ENSMUST00000104479 114 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Gm3443-201ENSMUST00000112772 285 ntAPPRIS P1 TSL 3 BASIC3.37□□□□□ -1.87
ShhQ62226 Gm15986-201ENSMUST00000122153 400 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Gm26255-201ENSMUST00000122492 103 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Gm25781-201ENSMUST00000122527 84 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Gm22988-201ENSMUST00000122759 144 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Gm24059-201ENSMUST00000157493 312 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Tcrg-C3-201ENSMUST00000164407 519 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
ShhQ62226 Gm26430-201ENSMUST00000178054 107 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Gm4761-201ENSMUST00000178086 582 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Gm28881-201ENSMUST00000187710 470 ntTSL 3 BASIC3.37□□□□□ -1.87
ShhQ62226 Gm44718-201ENSMUST00000206886 359 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Gm45686-201ENSMUST00000210259 460 ntTSL 5 BASIC3.37□□□□□ -1.87
ShhQ62226 AC100590.2-201ENSMUST00000219028 215 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Gm33981-201ENSMUST00000219918 660 ntTSL 5 BASIC3.37□□□□□ -1.87
ShhQ62226 Gm16419-201ENSMUST00000221057 625 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Gm9765-201ENSMUST00000043170 321 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Gm24626-201ENSMUST00000082621 161 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Gm24533-201ENSMUST00000083138 196 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Gm25480-201ENSMUST00000083217 133 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Mir101b-201ENSMUST00000083622 97 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Gm22577-201ENSMUST00000083731 109 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Btbd35f5-201ENSMUST00000179538 1950 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
ShhQ62226 Rtl4-201ENSMUST00000096301 1758 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
ShhQ62226 Gm44049-201ENSMUST00000204905 2984 ntBASIC3.37□□□□□ -1.87
ShhQ62226 Tfpi-202ENSMUST00000090732 3576 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
ShhQ62226 Gm35835-202ENSMUST00000216984 3350 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
ShhQ62226 Fancb-201ENSMUST00000057150 2422 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
ShhQ62226 Gm45264-201ENSMUST00000210090 3995 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Vmn2r-ps49-201ENSMUST00000173160 3551 ntBASIC3.36□□□□□ -1.87
ShhQ62226 Gm42993-201ENSMUST00000196856 7325 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 76,532 protein–RNA pairs in 78 ms