Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 AC122242.1-201ENSMUST00000224650 304 ntBASIC5.2□□□□□ -1.58
Rnf40Q3U319 AC154616.2-201ENSMUST00000227978 398 ntBASIC5.2□□□□□ -1.58
Rnf40Q3U319 Prrc2c-210ENSMUST00000182660 11502 ntAPPRIS P2 TSL 5 BASIC5.2□□□□□ -1.58
Rnf40Q3U319 Cd86-201ENSMUST00000089620 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
Rnf40Q3U319 Gm37236-201ENSMUST00000193670 3249 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Ccr2-201ENSMUST00000055918 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
Rnf40Q3U319 Tsga10-203ENSMUST00000114902 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm42842-201ENSMUST00000197736 3004 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Ano5-203ENSMUST00000207717 2753 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
Rnf40Q3U319 Elavl2-208ENSMUST00000107120 4191 ntTSL 5 BASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm40909-202ENSMUST00000223275 5564 ntTSL 5 BASIC5.19□□□□□ -1.58
Rnf40Q3U319 Ighv16-1-201ENSMUST00000103470 299 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm22266-201ENSMUST00000104011 138 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm12760-201ENSMUST00000117861 482 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm13213-201ENSMUST00000119668 474 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm11479-201ENSMUST00000134275 387 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm22883-201ENSMUST00000157376 106 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm22601-201ENSMUST00000157595 250 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm23995-201ENSMUST00000158060 129 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm24224-201ENSMUST00000158828 258 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm25364-201ENSMUST00000158851 107 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm26969-201ENSMUST00000183203 648 ntTSL 3 BASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm38270-201ENSMUST00000192721 407 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm37070-201ENSMUST00000193272 460 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Ighv1-27-201ENSMUST00000194473 340 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Mir6906-201ENSMUST00000198998 58 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 4930487D11Rik-201ENSMUST00000201983 295 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm10709-201ENSMUST00000213318 480 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Olfr613-202ENSMUST00000214173 3840 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
Rnf40Q3U319 AL731706.1-202ENSMUST00000226652 180 ntAPPRIS P5 BASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm24356-201ENSMUST00000082859 106 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm25260-201ENSMUST00000083053 134 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm26163-201ENSMUST00000083792 178 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm43594-201ENSMUST00000201153 3442 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Adam34-201ENSMUST00000110411 2584 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm37941-201ENSMUST00000192170 2309 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm38240-201ENSMUST00000195110 2487 ntBASIC5.19□□□□□ -1.58
Rnf40Q3U319 Igsf10-201ENSMUST00000039419 10084 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
Rnf40Q3U319 Cyp3a41b-201ENSMUST00000075837 2064 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
Rnf40Q3U319 Olfr220-202ENSMUST00000194229 3286 ntAPPRIS P1 TSL 3 BASIC5.19□□□□□ -1.58
Rnf40Q3U319 Gm45378-201ENSMUST00000211063 2711 ntBASIC5.18□□□□□ -1.58
Rnf40Q3U319 Olfr1065-202ENSMUST00000216162 2148 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
Rnf40Q3U319 5330434G04Rik-202ENSMUST00000136406 3545 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
Rnf40Q3U319 Gm5591-201ENSMUST00000079759 3441 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
Rnf40Q3U319 Gm21119-201ENSMUST00000178438 2522 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
Rnf40Q3U319 Gm15319-201ENSMUST00000084046 2522 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
Rnf40Q3U319 Zfp759-201ENSMUST00000052716 3482 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
Rnf40Q3U319 Gm37696-201ENSMUST00000194223 3349 ntBASIC5.18□□□□□ -1.58
Rnf40Q3U319 Olfr811-204ENSMUST00000217571 2399 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
Rnf40Q3U319 Gm23193-201ENSMUST00000102427 82 ntBASIC5.18□□□□□ -1.58
Rnf40Q3U319 Ifit2-201ENSMUST00000102826 3818 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
Rnf40Q3U319 Gm12086-201ENSMUST00000120863 228 ntBASIC5.18□□□□□ -1.58
Rnf40Q3U319 Gm22320-201ENSMUST00000157149 312 ntBASIC5.18□□□□□ -1.58
Rnf40Q3U319 Gm24720-201ENSMUST00000157518 166 ntBASIC5.18□□□□□ -1.58
Rnf40Q3U319 Gm22599-201ENSMUST00000157597 132 ntBASIC5.18□□□□□ -1.58
Rnf40Q3U319 Rpl28-ps4-201ENSMUST00000170447 377 ntBASIC5.18□□□□□ -1.58
Rnf40Q3U319 Mir5125-201ENSMUST00000175240 79 ntBASIC5.18□□□□□ -1.58
Rnf40Q3U319 Gm5849-201ENSMUST00000180151 351 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
Rnf40Q3U319 Mir6344-201ENSMUST00000183462 104 ntBASIC5.18□□□□□ -1.58
Rnf40Q3U319 Gm43105-201ENSMUST00000202987 459 ntBASIC5.18□□□□□ -1.58
Rnf40Q3U319 Gm45069-201ENSMUST00000208604 317 ntTSL 2 BASIC5.18□□□□□ -1.58
Rnf40Q3U319 1300002E11Rik-206ENSMUST00000209728 701 ntTSL 2 BASIC5.18□□□□□ -1.58
Rnf40Q3U319 AC159252.1-201ENSMUST00000224450 553 ntBASIC5.18□□□□□ -1.58
Rnf40Q3U319 Gm10172-201ENSMUST00000085929 558 ntBASIC5.18□□□□□ -1.58
Rnf40Q3U319 Nlrp4b-201ENSMUST00000047809 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
Rnf40Q3U319 Fat2-202ENSMUST00000108864 14423 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
Rnf40Q3U319 Gm11639-203ENSMUST00000212287 17665 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
Rnf40Q3U319 Mcmdc2-203ENSMUST00000125294 2003 ntTSL 5 BASIC5.18□□□□□ -1.58
Rnf40Q3U319 Olfr753-ps1-201ENSMUST00000174025 3121 ntAPPRIS P1 TSL 3 BASIC5.17□□□□□ -1.58
Rnf40Q3U319 Gm38259-201ENSMUST00000194602 3534 ntBASIC5.17□□□□□ -1.58
Rnf40Q3U319 AC122840.2-201ENSMUST00000221030 2659 ntBASIC5.17□□□□□ -1.58
Rnf40Q3U319 Gm18853-201ENSMUST00000183629 3596 ntBASIC5.17□□□□□ -1.58
Rnf40Q3U319 Gm38253-201ENSMUST00000194058 4678 ntBASIC5.17□□□□□ -1.58
Rnf40Q3U319 Gpr21-201ENSMUST00000065441 3619 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
Rnf40Q3U319 Mir872-201ENSMUST00000104728 81 ntBASIC5.17□□□□□ -1.58
Rnf40Q3U319 Gm2830-201ENSMUST00000140330 385 ntBASIC5.17□□□□□ -1.58
Rnf40Q3U319 Krtap27-1-201ENSMUST00000165580 646 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
Rnf40Q3U319 Rps12-ps24-201ENSMUST00000182321 381 ntBASIC5.17□□□□□ -1.58
Rnf40Q3U319 Gm4665-201ENSMUST00000183244 561 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
Rnf40Q3U319 Gm17951-201ENSMUST00000198536 496 ntBASIC5.17□□□□□ -1.58
Rnf40Q3U319 Gm42774-201ENSMUST00000198854 283 ntBASIC5.17□□□□□ -1.58
Rnf40Q3U319 Igkv20-101-2-201ENSMUST00000200406 339 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
Rnf40Q3U319 Gm45820-201ENSMUST00000212068 362 ntTSL 3 BASIC5.17□□□□□ -1.58
Rnf40Q3U319 Gm6056-201ENSMUST00000221253 488 ntBASIC5.17□□□□□ -1.58
Rnf40Q3U319 AC133083.2-201ENSMUST00000222826 272 ntTSL 5 BASIC5.17□□□□□ -1.58
Rnf40Q3U319 Zfp950-207ENSMUST00000180544 2568 ntAPPRIS P1 TSL 3 BASIC5.17□□□□□ -1.58
Rnf40Q3U319 Egfros-201ENSMUST00000150329 4063 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
Rnf40Q3U319 Serpini1-201ENSMUST00000029423 4091 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
Rnf40Q3U319 Casp12-201ENSMUST00000027009 2649 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
Rnf40Q3U319 Olfr665-203ENSMUST00000216257 2298 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
Rnf40Q3U319 Gprc6a-201ENSMUST00000020062 2856 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
Rnf40Q3U319 Ceacam3-201ENSMUST00000108491 3261 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
Rnf40Q3U319 Gramd1c-201ENSMUST00000036174 3501 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
Rnf40Q3U319 Nfatc3-202ENSMUST00000211991 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
Rnf40Q3U319 Vmn1r197-203ENSMUST00000227017 5158 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
Rnf40Q3U319 Mef2c-201ENSMUST00000005722 6217 ntTSL 5 BASIC5.16□□□□□ -1.58
Rnf40Q3U319 Ankar-202ENSMUST00000211837 4543 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
Rnf40Q3U319 Zfp97-201ENSMUST00000147630 2684 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
Rnf40Q3U319 Mybpc1-201ENSMUST00000119185 3752 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
Rnf40Q3U319 Cp-203ENSMUST00000108325 3183 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
Retrieved 100 of 76,532 protein–RNA pairs in 93.6 ms