Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm24275-201ENSMUST00000116780 146 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm22032-201ENSMUST00000116946 116 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm15231-201ENSMUST00000119174 447 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm12872-201ENSMUST00000121835 320 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm23887-201ENSMUST00000122683 172 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Tarbp2-207ENSMUST00000142114 420 ntTSL 5 BASIC3.42□□□□□ -1.86
ShhQ62226 Gm25827-201ENSMUST00000157089 107 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm25624-201ENSMUST00000157222 275 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm25339-201ENSMUST00000157458 232 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm22219-201ENSMUST00000157562 319 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm23411-201ENSMUST00000157988 62 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm24737-201ENSMUST00000158861 100 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm26195-201ENSMUST00000175035 101 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm24757-201ENSMUST00000176987 371 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm10105-201ENSMUST00000184601 270 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Mir6715-201ENSMUST00000184990 57 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm28740-201ENSMUST00000186142 215 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm44472-201ENSMUST00000204922 943 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm44703-201ENSMUST00000205724 248 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm17990-201ENSMUST00000211728 553 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm33680-201ENSMUST00000219336 576 ntTSL 5 BASIC3.42□□□□□ -1.86
ShhQ62226 AC115750.1-201ENSMUST00000220441 567 ntBASIC3.42□□□□□ -1.86
ShhQ62226 AC138401.2-201ENSMUST00000220461 365 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Olfr665-202ENSMUST00000215761 2522 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
ShhQ62226 Esp34-201ENSMUST00000173055 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
ShhQ62226 Gm37887-201ENSMUST00000192752 2716 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm38207-201ENSMUST00000193009 3505 ntBASIC3.41□□□□□ -1.86
ShhQ62226 AC121997.2-203ENSMUST00000228613 4192 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Gm14429-201ENSMUST00000121881 2024 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Gm2042-207ENSMUST00000181326 2440 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
ShhQ62226 Olfr715-202ENSMUST00000214919 5114 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
ShhQ62226 Wfdc18-201ENSMUST00000001009 521 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
ShhQ62226 Mir294-201ENSMUST00000104710 84 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Gm5938-201ENSMUST00000114030 775 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
ShhQ62226 Gm11923-201ENSMUST00000118135 508 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Gm12871-201ENSMUST00000118758 438 ntBASIC3.41□□□□□ -1.86
ShhQ62226 8030453O22Rik-201ENSMUST00000128919 370 ntTSL 3 BASIC3.41□□□□□ -1.86
ShhQ62226 Gm13775-201ENSMUST00000153865 751 ntTSL 3 BASIC3.41□□□□□ -1.86
ShhQ62226 Gm22310-201ENSMUST00000157509 116 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Gm25637-201ENSMUST00000157529 107 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Gm24780-201ENSMUST00000157635 143 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Gm26402-201ENSMUST00000158499 113 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Gm15900-201ENSMUST00000161584 342 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Gm17218-201ENSMUST00000165911 410 ntTSL 3 BASIC3.41□□□□□ -1.86
ShhQ62226 Gm21797-201ENSMUST00000177579 543 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
ShhQ62226 Gm10717-205ENSMUST00000177601 645 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
ShhQ62226 Gm21767-201ENSMUST00000178689 543 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
ShhQ62226 Gm21822-201ENSMUST00000179302 543 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
ShhQ62226 Gm21171-201ENSMUST00000180048 673 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Gm7656-201ENSMUST00000182468 1004 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Gm27718-201ENSMUST00000183721 86 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Ranbp2-ps10-201ENSMUST00000185097 385 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Gm28930-201ENSMUST00000189525 437 ntTSL 5 BASIC3.41□□□□□ -1.86
ShhQ62226 Gm28822-201ENSMUST00000191140 778 ntTSL 5 BASIC3.41□□□□□ -1.86
ShhQ62226 Gm43035-201ENSMUST00000197626 517 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Gm44870-201ENSMUST00000207291 357 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Gm45826-201ENSMUST00000212226 265 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
ShhQ62226 Olfr638-202ENSMUST00000218325 1158 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
ShhQ62226 AC124346.1-201ENSMUST00000218539 364 ntBASIC3.41□□□□□ -1.86
ShhQ62226 AC147240.1-201ENSMUST00000218767 431 ntBASIC3.41□□□□□ -1.86
ShhQ62226 AC134420.1-201ENSMUST00000227027 289 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Gm10717-201ENSMUST00000075573 684 ntTSL 5 BASIC3.41□□□□□ -1.86
ShhQ62226 Gm23650-201ENSMUST00000083355 70 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Olfr1030-201ENSMUST00000056849 4522 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
ShhQ62226 A630033H20Rik-206ENSMUST00000180182 2997 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
ShhQ62226 Vmn1r51-205ENSMUST00000227109 4214 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
ShhQ62226 Gm18432-201ENSMUST00000195568 1451 ntBASIC3.41□□□□□ -1.86
ShhQ62226 Skint3-202ENSMUST00000170945 3843 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.86
ShhQ62226 Olfr298-202ENSMUST00000213223 3273 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
ShhQ62226 Slc22a30-203ENSMUST00000120540 2598 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
ShhQ62226 Zfp971-202ENSMUST00000108926 1413 ntAPPRIS P1 TSL 3 BASIC3.4□□□□□ -1.87
ShhQ62226 Gm11600-201ENSMUST00000119592 240 ntBASIC3.4□□□□□ -1.87
ShhQ62226 Gm23231-201ENSMUST00000157299 104 ntBASIC3.4□□□□□ -1.87
ShhQ62226 Gm24192-201ENSMUST00000157978 145 ntBASIC3.4□□□□□ -1.87
ShhQ62226 Gm24857-201ENSMUST00000158061 310 ntBASIC3.4□□□□□ -1.87
ShhQ62226 Gm22890-201ENSMUST00000158642 144 ntBASIC3.4□□□□□ -1.87
ShhQ62226 Nron-204ENSMUST00000158971 370 ntBASIC3.4□□□□□ -1.87
ShhQ62226 2310075C17Rik-201ENSMUST00000161216 326 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
ShhQ62226 Ear-ps12-201ENSMUST00000161720 451 ntBASIC3.4□□□□□ -1.87
ShhQ62226 Pate1-201ENSMUST00000170021 389 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
ShhQ62226 Mir5129-201ENSMUST00000174938 78 ntBASIC3.4□□□□□ -1.87
ShhQ62226 Gm23415-201ENSMUST00000175519 83 ntBASIC3.4□□□□□ -1.87
ShhQ62226 Scgb2b21-201ENSMUST00000185407 520 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
ShhQ62226 C230029F24Rik-202ENSMUST00000188673 554 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
ShhQ62226 Gm44343-201ENSMUST00000196702 90 ntBASIC3.4□□□□□ -1.87
ShhQ62226 Gm2189-201ENSMUST00000201419 429 ntBASIC3.4□□□□□ -1.87
ShhQ62226 Gm44060-201ENSMUST00000204440 410 ntBASIC3.4□□□□□ -1.87
ShhQ62226 Gm34811-201ENSMUST00000206580 445 ntTSL 3 BASIC3.4□□□□□ -1.87
ShhQ62226 AC150314.1-201ENSMUST00000214798 238 ntBASIC3.4□□□□□ -1.87
ShhQ62226 AC153506.2-201ENSMUST00000218051 257 ntBASIC3.4□□□□□ -1.87
ShhQ62226 AC166358.7-201ENSMUST00000221132 108 ntBASIC3.4□□□□□ -1.87
ShhQ62226 AC125543.5-201ENSMUST00000222799 108 ntBASIC3.4□□□□□ -1.87
ShhQ62226 CT485612.2-201ENSMUST00000223014 151 ntBASIC3.4□□□□□ -1.87
ShhQ62226 Olfr722-201ENSMUST00000053290 1582 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
ShhQ62226 mt-Td-201ENSMUST00000082404 70 ntBASIC3.4□□□□□ -1.87
ShhQ62226 Gm22974-201ENSMUST00000083301 103 ntBASIC3.4□□□□□ -1.87
ShhQ62226 Gm10161-201ENSMUST00000091506 204 ntBASIC3.4□□□□□ -1.87
ShhQ62226 Vmn1r80-202ENSMUST00000227205 10892 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
ShhQ62226 Gm37792-201ENSMUST00000195761 3413 ntBASIC3.4□□□□□ -1.87
ShhQ62226 Olfr502-202ENSMUST00000216919 3282 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
Retrieved 100 of 76,532 protein–RNA pairs in 96.7 ms