Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lima1Q9ERG0 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Lima1Q9ERG0 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lima1Q9ERG0 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lima1Q9ERG0 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lima1Q9ERG0 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Lima1Q9ERG0 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lima1Q9ERG0 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lima1Q9ERG0 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lima1Q9ERG0 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lima1Q9ERG0 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Lima1Q9ERG0 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lima1Q9ERG0 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Lima1Q9ERG0 Gm2399-201ENSMUST00000104944 225 ntBASIC16.96■□□□□ 0.31
Lima1Q9ERG0 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC16.96■□□□□ 0.31
Lima1Q9ERG0 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC16.96■□□□□ 0.31
Lima1Q9ERG0 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Lima1Q9ERG0 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC16.96■□□□□ 0.31
Lima1Q9ERG0 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC16.96■□□□□ 0.31
Lima1Q9ERG0 AC122769.4-201ENSMUST00000228166 901 ntBASIC16.96■□□□□ 0.31
Lima1Q9ERG0 Gm10602-201ENSMUST00000098239 609 ntBASIC16.96■□□□□ 0.31
Lima1Q9ERG0 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Lima1Q9ERG0 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC16.96■□□□□ 0.31
Lima1Q9ERG0 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Lima1Q9ERG0 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Lima1Q9ERG0 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Lima1Q9ERG0 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Gm16499-203ENSMUST00000204633 2177 ntBASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Gm43859-201ENSMUST00000200075 1412 ntBASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Lima1Q9ERG0 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lima1Q9ERG0 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Mir8112-201ENSMUST00000184382 131 ntBASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Gm3807-201ENSMUST00000193520 1168 ntBASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Gm5408-201ENSMUST00000197998 747 ntBASIC16.94■□□□□ 0.3
Lima1Q9ERG0 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Lima1Q9ERG0 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Lima1Q9ERG0 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lima1Q9ERG0 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Lima1Q9ERG0 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lima1Q9ERG0 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lima1Q9ERG0 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lima1Q9ERG0 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lima1Q9ERG0 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Lima1Q9ERG0 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lima1Q9ERG0 Gm38285-201ENSMUST00000192928 922 ntBASIC16.92■□□□□ 0.3
Lima1Q9ERG0 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Lima1Q9ERG0 Wnt10b-205ENSMUST00000226846 1204 ntBASIC16.92■□□□□ 0.3
Lima1Q9ERG0 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Lima1Q9ERG0 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lima1Q9ERG0 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC16.92■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms