Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Cpsf1Q9EPU4 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Cpsf1Q9EPU4 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Cpsf1Q9EPU4 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Cpsf1Q9EPU4 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC23.73■■□□□ 1.39
Cpsf1Q9EPU4 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
Cpsf1Q9EPU4 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cpsf1Q9EPU4 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Cpsf1Q9EPU4 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cpsf1Q9EPU4 Phf7-203ENSMUST00000226565 1971 ntBASIC23.72■■□□□ 1.39
Cpsf1Q9EPU4 Gm11620-201ENSMUST00000118770 1845 ntBASIC23.72■■□□□ 1.39
Cpsf1Q9EPU4 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cpsf1Q9EPU4 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cpsf1Q9EPU4 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cpsf1Q9EPU4 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC23.72■■□□□ 1.39
Cpsf1Q9EPU4 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
Cpsf1Q9EPU4 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cpsf1Q9EPU4 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cpsf1Q9EPU4 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Cpsf1Q9EPU4 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC23.72■■□□□ 1.39
Cpsf1Q9EPU4 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Cpsf1Q9EPU4 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Cpsf1Q9EPU4 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Cpsf1Q9EPU4 Gm14859-201ENSMUST00000117752 357 ntBASIC23.71■■□□□ 1.39
Cpsf1Q9EPU4 Gm27704-201ENSMUST00000185094 107 ntBASIC23.71■■□□□ 1.39
Cpsf1Q9EPU4 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Cpsf1Q9EPU4 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Cpsf1Q9EPU4 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Cpsf1Q9EPU4 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC23.71■■□□□ 1.39
Cpsf1Q9EPU4 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Cpsf1Q9EPU4 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Cpsf1Q9EPU4 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
Cpsf1Q9EPU4 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Cpsf1Q9EPU4 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.39
Cpsf1Q9EPU4 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
Cpsf1Q9EPU4 Gm27357-201ENSMUST00000183754 135 ntBASIC23.7■■□□□ 1.38
Cpsf1Q9EPU4 Gm27741-201ENSMUST00000185060 237 ntBASIC23.7■■□□□ 1.38
Cpsf1Q9EPU4 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Cpsf1Q9EPU4 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Cpsf1Q9EPU4 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
Cpsf1Q9EPU4 AC124392.1-201ENSMUST00000225172 5324 ntBASIC23.7■■□□□ 1.38
Cpsf1Q9EPU4 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Cpsf1Q9EPU4 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Cpsf1Q9EPU4 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Cpsf1Q9EPU4 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC23.7■■□□□ 1.38
Cpsf1Q9EPU4 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Cpsf1Q9EPU4 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC23.69■■□□□ 1.38
Cpsf1Q9EPU4 AC130713.1-201ENSMUST00000228853 1096 ntBASIC23.69■■□□□ 1.38
Cpsf1Q9EPU4 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
Cpsf1Q9EPU4 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Cpsf1Q9EPU4 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Cpsf1Q9EPU4 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC23.69■■□□□ 1.38
Cpsf1Q9EPU4 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Cpsf1Q9EPU4 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Cpsf1Q9EPU4 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC23.68■■□□□ 1.38
Cpsf1Q9EPU4 Gm11950-201ENSMUST00000121615 838 ntBASIC23.68■■□□□ 1.38
Cpsf1Q9EPU4 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Cpsf1Q9EPU4 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Cpsf1Q9EPU4 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Cpsf1Q9EPU4 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
Cpsf1Q9EPU4 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC23.67■■□□□ 1.38
Cpsf1Q9EPU4 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Cpsf1Q9EPU4 Gm17971-201ENSMUST00000190239 806 ntBASIC23.67■■□□□ 1.38
Cpsf1Q9EPU4 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC23.67■■□□□ 1.38
Cpsf1Q9EPU4 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Cpsf1Q9EPU4 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Cpsf1Q9EPU4 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Cpsf1Q9EPU4 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Cpsf1Q9EPU4 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Cpsf1Q9EPU4 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
Cpsf1Q9EPU4 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Cpsf1Q9EPU4 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Cpsf1Q9EPU4 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
Cpsf1Q9EPU4 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Cpsf1Q9EPU4 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
Cpsf1Q9EPU4 Mir770-201ENSMUST00000103252 94 ntBASIC23.66■■□□□ 1.38
Cpsf1Q9EPU4 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Cpsf1Q9EPU4 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC23.66■■□□□ 1.38
Cpsf1Q9EPU4 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Cpsf1Q9EPU4 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Cpsf1Q9EPU4 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC23.65■■□□□ 1.38
Cpsf1Q9EPU4 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Cpsf1Q9EPU4 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Cpsf1Q9EPU4 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
Cpsf1Q9EPU4 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Cpsf1Q9EPU4 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC23.65■■□□□ 1.38
Cpsf1Q9EPU4 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
Cpsf1Q9EPU4 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
Cpsf1Q9EPU4 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Cpsf1Q9EPU4 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Cpsf1Q9EPU4 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC23.65■■□□□ 1.38
Cpsf1Q9EPU4 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
Cpsf1Q9EPU4 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Cpsf1Q9EPU4 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Cpsf1Q9EPU4 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
Cpsf1Q9EPU4 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Cpsf1Q9EPU4 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Cpsf1Q9EPU4 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC23.64■■□□□ 1.37
Cpsf1Q9EPU4 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
Cpsf1Q9EPU4 Gm28033-201ENSMUST00000184224 96 ntBASIC23.64■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 73.5 ms