Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cdc40Q9DC48 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC15.94■□□□□ 0.14
Cdc40Q9DC48 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cdc40Q9DC48 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Cdc40Q9DC48 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cdc40Q9DC48 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cdc40Q9DC48 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
Cdc40Q9DC48 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cdc40Q9DC48 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cdc40Q9DC48 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cdc40Q9DC48 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Cdc40Q9DC48 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Cdc40Q9DC48 Gm10654-201ENSMUST00000098653 1633 ntBASIC15.94■□□□□ 0.14
Cdc40Q9DC48 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 Gm21814-202ENSMUST00000203277 873 ntBASIC15.93■□□□□ 0.14
Cdc40Q9DC48 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC15.93■□□□□ 0.14
Cdc40Q9DC48 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Gm37194-201ENSMUST00000193092 3031 ntBASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Cdc40Q9DC48 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Gm37820-201ENSMUST00000194021 2147 ntBASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Odf3b-204ENSMUST00000227834 930 ntBASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Cdc40Q9DC48 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Zcchc6-207ENSMUST00000225576 2499 ntBASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Gm13401-201ENSMUST00000117074 291 ntBASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Gm12085-201ENSMUST00000119263 940 ntBASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Gm11539-201ENSMUST00000119837 557 ntBASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Gm13436-201ENSMUST00000120418 567 ntBASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Gm10231-201ENSMUST00000181584 441 ntBASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Mir8112-201ENSMUST00000184382 131 ntBASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Gm3375-201ENSMUST00000203929 796 ntBASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Gm10175-202ENSMUST00000208752 441 ntBASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Cdc40Q9DC48 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms