Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 AC154222.1-201ENSMUST00000223882 475 ntBASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Gm13312-201ENSMUST00000119631 718 ntBASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Gm7506-201ENSMUST00000207758 815 ntBASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Gm15590-201ENSMUST00000078419 552 ntBASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Col27a1Q5QNQ9 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Col27a1Q5QNQ9 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Col27a1Q5QNQ9 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC16.6■□□□□ 0.25
Col27a1Q5QNQ9 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC16.6■□□□□ 0.25
Col27a1Q5QNQ9 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col27a1Q5QNQ9 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC16.6■□□□□ 0.25
Col27a1Q5QNQ9 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC16.6■□□□□ 0.25
Col27a1Q5QNQ9 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col27a1Q5QNQ9 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC16.6■□□□□ 0.25
Col27a1Q5QNQ9 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC16.6■□□□□ 0.25
Col27a1Q5QNQ9 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC16.6■□□□□ 0.25
Col27a1Q5QNQ9 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col27a1Q5QNQ9 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col27a1Q5QNQ9 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col27a1Q5QNQ9 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Gm4535-201ENSMUST00000182274 558 ntBASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Gm10355-201ENSMUST00000097146 517 ntBASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC16.59■□□□□ 0.25
Col27a1Q5QNQ9 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col27a1Q5QNQ9 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col27a1Q5QNQ9 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
Col27a1Q5QNQ9 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col27a1Q5QNQ9 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col27a1Q5QNQ9 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col27a1Q5QNQ9 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
Col27a1Q5QNQ9 Gm25745-201ENSMUST00000174945 133 ntBASIC16.58■□□□□ 0.24
Col27a1Q5QNQ9 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col27a1Q5QNQ9 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col27a1Q5QNQ9 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC16.57■□□□□ 0.24
Col27a1Q5QNQ9 Gm27628-201ENSMUST00000184911 107 ntBASIC16.57■□□□□ 0.24
Col27a1Q5QNQ9 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC16.57■□□□□ 0.24
Col27a1Q5QNQ9 AC084391.1-201ENSMUST00000200651 141 ntBASIC16.57■□□□□ 0.24
Col27a1Q5QNQ9 Gm44430-201ENSMUST00000203376 995 ntBASIC16.57■□□□□ 0.24
Col27a1Q5QNQ9 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Col27a1Q5QNQ9 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col27a1Q5QNQ9 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col27a1Q5QNQ9 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col27a1Q5QNQ9 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
Col27a1Q5QNQ9 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col27a1Q5QNQ9 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
Col27a1Q5QNQ9 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Col27a1Q5QNQ9 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col27a1Q5QNQ9 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col27a1Q5QNQ9 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col27a1Q5QNQ9 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 AV026068-213ENSMUST00000223675 1171 ntBASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col27a1Q5QNQ9 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms