Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Gm27000-201ENSMUST00000182943 842 ntBASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Upf3aQ3ULJ3 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 AC123834.2-201ENSMUST00000224038 2340 ntBASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Upf3aQ3ULJ3 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Upf3aQ3ULJ3 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Upf3aQ3ULJ3 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Upf3aQ3ULJ3 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Upf3aQ3ULJ3 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Upf3aQ3ULJ3 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Upf3aQ3ULJ3 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
Upf3aQ3ULJ3 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC18.02■□□□□ 0.48
Upf3aQ3ULJ3 Gm34391-201ENSMUST00000203706 907 ntBASIC18.02■□□□□ 0.48
Upf3aQ3ULJ3 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Upf3aQ3ULJ3 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Upf3aQ3ULJ3 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Upf3aQ3ULJ3 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Upf3aQ3ULJ3 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Upf3aQ3ULJ3 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Upf3aQ3ULJ3 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Upf3aQ3ULJ3 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3aQ3ULJ3 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3aQ3ULJ3 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3aQ3ULJ3 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3aQ3ULJ3 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3aQ3ULJ3 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
Upf3aQ3ULJ3 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3aQ3ULJ3 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Upf3aQ3ULJ3 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Upf3aQ3ULJ3 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Upf3aQ3ULJ3 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
Upf3aQ3ULJ3 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Upf3aQ3ULJ3 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC18■□□□□ 0.47
Upf3aQ3ULJ3 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
Upf3aQ3ULJ3 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Upf3aQ3ULJ3 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Upf3aQ3ULJ3 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
Upf3aQ3ULJ3 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Upf3aQ3ULJ3 Gm11336-201ENSMUST00000118168 334 ntBASIC18■□□□□ 0.47
Upf3aQ3ULJ3 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC18■□□□□ 0.47
Upf3aQ3ULJ3 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Upf3aQ3ULJ3 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Upf3aQ3ULJ3 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Upf3aQ3ULJ3 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Upf3aQ3ULJ3 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Gm13186-201ENSMUST00000118031 316 ntBASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 Birc2-201ENSMUST00000054878 378 ntBASIC17.99■□□□□ 0.47
Upf3aQ3ULJ3 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms