Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col8a1Q00780 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
Col8a1Q00780 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col8a1Q00780 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC14.59□□□□□ -0.07
Col8a1Q00780 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col8a1Q00780 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col8a1Q00780 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC14.59□□□□□ -0.07
Col8a1Q00780 Gm13401-201ENSMUST00000117074 291 ntBASIC14.59□□□□□ -0.07
Col8a1Q00780 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col8a1Q00780 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC14.59□□□□□ -0.07
Col8a1Q00780 Gm9731-201ENSMUST00000209480 747 ntBASIC14.59□□□□□ -0.07
Col8a1Q00780 AC124569.2-201ENSMUST00000225998 818 ntBASIC14.59□□□□□ -0.07
Col8a1Q00780 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col8a1Q00780 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col8a1Q00780 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col8a1Q00780 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col8a1Q00780 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC14.59□□□□□ -0.07
Col8a1Q00780 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col8a1Q00780 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col8a1Q00780 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col8a1Q00780 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col8a1Q00780 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col8a1Q00780 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col8a1Q00780 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col8a1Q00780 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Col8a1Q00780 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC14.58□□□□□ -0.08
Col8a1Q00780 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col8a1Q00780 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col8a1Q00780 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC14.58□□□□□ -0.08
Col8a1Q00780 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col8a1Q00780 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC14.58□□□□□ -0.08
Col8a1Q00780 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col8a1Q00780 AC120002.2-201ENSMUST00000220205 773 ntBASIC14.58□□□□□ -0.08
Col8a1Q00780 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col8a1Q00780 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col8a1Q00780 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col8a1Q00780 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col8a1Q00780 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Col8a1Q00780 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col8a1Q00780 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col8a1Q00780 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col8a1Q00780 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col8a1Q00780 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col8a1Q00780 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
Col8a1Q00780 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col8a1Q00780 Gm15853-202ENSMUST00000195518 2041 ntBASIC14.58□□□□□ -0.08
Col8a1Q00780 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col8a1Q00780 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Gm10418-201ENSMUST00000100943 576 ntBASIC14.57□□□□□ -0.08
Col8a1Q00780 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC14.57□□□□□ -0.08
Col8a1Q00780 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC14.57□□□□□ -0.08
Col8a1Q00780 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC14.57□□□□□ -0.08
Col8a1Q00780 Gm43073-201ENSMUST00000198200 1189 ntBASIC14.57□□□□□ -0.08
Col8a1Q00780 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC14.57□□□□□ -0.08
Col8a1Q00780 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Col8a1Q00780 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col8a1Q00780 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col8a1Q00780 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Col8a1Q00780 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col8a1Q00780 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC14.56□□□□□ -0.08
Col8a1Q00780 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col8a1Q00780 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC14.56□□□□□ -0.08
Col8a1Q00780 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col8a1Q00780 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col8a1Q00780 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC14.56□□□□□ -0.08
Col8a1Q00780 Il3ra-202ENSMUST00000223589 738 ntBASIC14.56□□□□□ -0.08
Col8a1Q00780 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC14.56□□□□□ -0.08
Col8a1Q00780 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col8a1Q00780 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col8a1Q00780 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col8a1Q00780 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col8a1Q00780 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC14.56□□□□□ -0.08
Col8a1Q00780 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Col8a1Q00780 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Col8a1Q00780 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Col8a1Q00780 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms