Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RaraP11416 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RaraP11416 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RaraP11416 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RaraP11416 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RaraP11416 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC18.57■□□□□ 0.56
RaraP11416 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC18.57■□□□□ 0.56
RaraP11416 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
RaraP11416 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
RaraP11416 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
RaraP11416 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RaraP11416 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RaraP11416 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RaraP11416 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
RaraP11416 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RaraP11416 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RaraP11416 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
RaraP11416 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
RaraP11416 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RaraP11416 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC18.56■□□□□ 0.56
RaraP11416 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
RaraP11416 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
RaraP11416 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RaraP11416 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
RaraP11416 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
RaraP11416 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
RaraP11416 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RaraP11416 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RaraP11416 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RaraP11416 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RaraP11416 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RaraP11416 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RaraP11416 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RaraP11416 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RaraP11416 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RaraP11416 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RaraP11416 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC18.55■□□□□ 0.56
RaraP11416 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RaraP11416 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RaraP11416 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
RaraP11416 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RaraP11416 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RaraP11416 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RaraP11416 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RaraP11416 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
RaraP11416 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
RaraP11416 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RaraP11416 Gm13216-201ENSMUST00000117145 591 ntBASIC18.54■□□□□ 0.56
RaraP11416 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RaraP11416 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC18.54■□□□□ 0.56
RaraP11416 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RaraP11416 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RaraP11416 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RaraP11416 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RaraP11416 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
RaraP11416 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
RaraP11416 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RaraP11416 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RaraP11416 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
RaraP11416 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
RaraP11416 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RaraP11416 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RaraP11416 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RaraP11416 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RaraP11416 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RaraP11416 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
RaraP11416 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RaraP11416 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC18.53■□□□□ 0.56
RaraP11416 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RaraP11416 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
RaraP11416 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.53■□□□□ 0.56
RaraP11416 Gm4974-201ENSMUST00000209974 875 ntBASIC18.53■□□□□ 0.56
RaraP11416 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RaraP11416 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
RaraP11416 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RaraP11416 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC18.53■□□□□ 0.56
RaraP11416 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RaraP11416 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
RaraP11416 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
RaraP11416 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC18.52■□□□□ 0.56
RaraP11416 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RaraP11416 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RaraP11416 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
RaraP11416 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RaraP11416 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
RaraP11416 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
RaraP11416 Gm12441-201ENSMUST00000121806 588 ntBASIC18.52■□□□□ 0.56
RaraP11416 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC18.52■□□□□ 0.56
RaraP11416 Gm28265-201ENSMUST00000188201 2319 ntBASIC18.52■□□□□ 0.56
RaraP11416 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
RaraP11416 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
RaraP11416 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
RaraP11416 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC18.51■□□□□ 0.55
RaraP11416 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RaraP11416 Hivep3-201ENSMUST00000084306 2973 ntBASIC18.51■□□□□ 0.55
RaraP11416 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC18.51■□□□□ 0.55
RaraP11416 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RaraP11416 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RaraP11416 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RaraP11416 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms