Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Gm16042-201ENSMUST00000204813 1247 ntBASIC18.68■□□□□ 0.58
Chmp6P0C0A3 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chmp6P0C0A3 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chmp6P0C0A3 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Chmp6P0C0A3 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chmp6P0C0A3 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Chmp6P0C0A3 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chmp6P0C0A3 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chmp6P0C0A3 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Chmp6P0C0A3 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chmp6P0C0A3 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Mir6982-201ENSMUST00000184354 68 ntBASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC18.67■□□□□ 0.58
Chmp6P0C0A3 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Gm4974-201ENSMUST00000209974 875 ntBASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Chmp6P0C0A3 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Gm12085-201ENSMUST00000119263 940 ntBASIC18.65■□□□□ 0.58
Chmp6P0C0A3 AC156016.1-201ENSMUST00000227190 1035 ntBASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chmp6P0C0A3 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
Chmp6P0C0A3 Gm7292-201ENSMUST00000194706 2527 ntBASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC18.64■□□□□ 0.57
Chmp6P0C0A3 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chmp6P0C0A3 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Chmp6P0C0A3 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms