Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm25407-201ENSMUST00000104102 134 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm23532-201ENSMUST00000104569 112 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm14681-201ENSMUST00000118047 411 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm11704-201ENSMUST00000120031 214 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Spink2-202ENSMUST00000120429 594 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
ShhQ62226 Gm11556-201ENSMUST00000120751 288 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm14638-201ENSMUST00000121338 216 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm14678-201ENSMUST00000121396 482 ntBASIC3.44□□□□□ -1.86
ShhQ62226 n-R5s179-201ENSMUST00000122564 118 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm11195-201ENSMUST00000135030 441 ntTSL 3 BASIC3.44□□□□□ -1.86
ShhQ62226 AI847159-204ENSMUST00000148997 753 ntTSL 3 BASIC3.44□□□□□ -1.86
ShhQ62226 Gm22011-201ENSMUST00000158790 123 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm28016-201ENSMUST00000184594 196 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm29104-201ENSMUST00000186304 222 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Ighv12-1-201ENSMUST00000195542 329 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm38088-201ENSMUST00000195829 241 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm43723-201ENSMUST00000196886 189 ntBASIC3.44□□□□□ -1.86
ShhQ62226 4930584F24Rik-203ENSMUST00000197091 954 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
ShhQ62226 Gm36406-202ENSMUST00000203761 551 ntTSL 5 BASIC3.44□□□□□ -1.86
ShhQ62226 Gm45252-201ENSMUST00000211579 397 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm45911-201ENSMUST00000211844 601 ntTSL 3 BASIC3.44□□□□□ -1.86
ShhQ62226 Gm2436-201ENSMUST00000219562 774 ntBASIC3.44□□□□□ -1.86
ShhQ62226 AC153979.1-201ENSMUST00000219684 242 ntTSL 5 BASIC3.44□□□□□ -1.86
ShhQ62226 Gm8785-201ENSMUST00000220259 487 ntBASIC3.44□□□□□ -1.86
ShhQ62226 AC132954.1-201ENSMUST00000221017 342 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm46367-202ENSMUST00000222771 501 ntTSL 5 BASIC3.44□□□□□ -1.86
ShhQ62226 AC122393.3-201ENSMUST00000226343 1059 ntBASIC3.44□□□□□ -1.86
ShhQ62226 AC147545.1-201ENSMUST00000227528 108 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm23345-201ENSMUST00000083817 150 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Olfr895-201ENSMUST00000093864 951 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm21035-201ENSMUST00000207867 2608 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm3616-201ENSMUST00000174430 2514 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Gm3683-201ENSMUST00000175701 2513 ntBASIC3.44□□□□□ -1.86
ShhQ62226 Olfr186-202ENSMUST00000206463 2208 ntAPPRIS P1 TSL 3 BASIC3.44□□□□□ -1.86
ShhQ62226 Olfr112-205ENSMUST00000213274 3558 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
ShhQ62226 Gm45159-201ENSMUST00000208630 25241 ntTSL 5 BASIC3.44□□□□□ -1.86
ShhQ62226 Olfr1293-ps-203ENSMUST00000217845 3628 ntAPPRIS P5 TSL 5 BASIC3.44□□□□□ -1.86
ShhQ62226 Cntn6-202ENSMUST00000161070 3515 ntTSL 5 BASIC3.44□□□□□ -1.86
ShhQ62226 Gm36969-201ENSMUST00000194551 2809 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Pramel6-202ENSMUST00000111572 1781 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
ShhQ62226 B020011L13Rik-201ENSMUST00000188801 2879 ntAPPRIS P1 TSL 3 BASIC3.43□□□□□ -1.86
ShhQ62226 Gm37298-201ENSMUST00000193770 3868 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Olfr873-205ENSMUST00000215540 3784 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
ShhQ62226 Gm12255-201ENSMUST00000117184 284 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm12125-201ENSMUST00000117261 736 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm14355-201ENSMUST00000117352 264 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm13046-201ENSMUST00000117391 501 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm14837-201ENSMUST00000119688 206 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm8244-201ENSMUST00000121254 264 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm14333-201ENSMUST00000130484 264 ntBASIC3.43□□□□□ -1.86
ShhQ62226 4930527E20Rik-201ENSMUST00000135700 351 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
ShhQ62226 Gm22561-201ENSMUST00000157331 84 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm26171-201ENSMUST00000158422 131 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm25369-201ENSMUST00000158848 132 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm17162-201ENSMUST00000168538 473 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm26460-201ENSMUST00000175061 126 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm20693-201ENSMUST00000177431 211 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm8532-201ENSMUST00000179174 461 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm27535-201ENSMUST00000183814 157 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Mir7k-201ENSMUST00000184115 110 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm29327-201ENSMUST00000188229 388 ntTSL 5 BASIC3.43□□□□□ -1.86
ShhQ62226 Gm28920-201ENSMUST00000189957 699 ntBASIC3.43□□□□□ -1.86
ShhQ62226 1700024B18Rik-201ENSMUST00000190088 423 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
ShhQ62226 Gm29185-201ENSMUST00000190578 516 ntTSL 5 BASIC3.43□□□□□ -1.86
ShhQ62226 6430573P05Rik-201ENSMUST00000192562 508 ntTSL 5 BASIC3.43□□□□□ -1.86
ShhQ62226 Gm32340-201ENSMUST00000192883 259 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm43624-201ENSMUST00000197368 180 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Olfr1556-ps1-201ENSMUST00000204688 466 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm36776-201ENSMUST00000207006 203 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Nbdy-205ENSMUST00000208235 132 ntAPPRIS P2 TSL 2 BASIC3.43□□□□□ -1.86
ShhQ62226 Gm11213-202ENSMUST00000210529 524 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
ShhQ62226 Gm45312-201ENSMUST00000210566 311 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm18854-201ENSMUST00000211196 329 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm36368-201ENSMUST00000212026 461 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
ShhQ62226 AC140785.1-201ENSMUST00000217782 383 ntBASIC3.43□□□□□ -1.86
ShhQ62226 AC160031.2-201ENSMUST00000218242 274 ntBASIC3.43□□□□□ -1.86
ShhQ62226 AC114575.1-201ENSMUST00000218634 353 ntTSL 3 BASIC3.43□□□□□ -1.86
ShhQ62226 AC153361.1-201ENSMUST00000219679 247 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm33424-201ENSMUST00000222317 257 ntTSL 5 BASIC3.43□□□□□ -1.86
ShhQ62226 AC117656.1-201ENSMUST00000225826 339 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Olfr294-201ENSMUST00000078588 1008 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
ShhQ62226 Rps17-201ENSMUST00000080813 494 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
ShhQ62226 n-R5s220-201ENSMUST00000082926 120 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm24045-201ENSMUST00000083113 98 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm25579-201ENSMUST00000083407 106 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm23096-201ENSMUST00000083447 107 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Klra3-201ENSMUST00000088017 984 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
ShhQ62226 Olfr1033-204ENSMUST00000215682 3625 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
ShhQ62226 Gm37204-201ENSMUST00000192389 3961 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Olfr476-202ENSMUST00000217173 2539 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
ShhQ62226 Olfr105-ps-202ENSMUST00000215518 3778 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
ShhQ62226 Cbll1-204ENSMUST00000185739 3945 ntAPPRIS ALT1 TSL 1 (best) BASIC3.43□□□□□ -1.86
ShhQ62226 AC126033.1-201ENSMUST00000227628 6773 ntBASIC3.43□□□□□ -1.86
ShhQ62226 Gm42524-201ENSMUST00000202881 2214 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
ShhQ62226 Olfr617-202ENSMUST00000215755 3000 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
ShhQ62226 Gm43751-201ENSMUST00000200275 3071 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Olfr1137-202ENSMUST00000214209 3073 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
ShhQ62226 Gm45848-201ENSMUST00000212932 1871 ntTSL 5 BASIC3.42□□□□□ -1.86
ShhQ62226 Gm22831-201ENSMUST00000102473 109 ntBASIC3.42□□□□□ -1.86
ShhQ62226 Gm11939-201ENSMUST00000104931 300 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
Retrieved 100 of 76,532 protein–RNA pairs in 88.3 ms