Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm24611-201ENSMUST00000083272 107 ntBASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Kctd12b-201ENSMUST00000039424 4795 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Esp34-202ENSMUST00000178654 1413 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Olfr665-202ENSMUST00000215761 2522 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Olfr17-202ENSMUST00000210568 3666 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Olfr1178-202ENSMUST00000214040 6480 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 D030040B21Rik-201ENSMUST00000181371 2788 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Mmrn1-203ENSMUST00000204333 4472 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 AC158921.1-201ENSMUST00000227861 3468 ntBASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Gm23322-201ENSMUST00000104464 167 ntBASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Gm11221-201ENSMUST00000117230 597 ntBASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Gm11386-201ENSMUST00000117761 347 ntBASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Etaa1os-201ENSMUST00000140161 550 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Gm14389-201ENSMUST00000140453 241 ntBASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Esp34-201ENSMUST00000173055 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Gm24810-201ENSMUST00000175317 70 ntBASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Gm28141-201ENSMUST00000186676 342 ntBASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Gm19641-201ENSMUST00000188432 417 ntBASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Gm28299-201ENSMUST00000189908 339 ntBASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Crs-ps-201ENSMUST00000203723 760 ntBASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Nat1-202ENSMUST00000212171 1208 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 AC153361.2-201ENSMUST00000218188 481 ntTSL 5 BASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 AC158805.1-201ENSMUST00000218197 2631 ntBASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 AC159232.1-201ENSMUST00000222297 580 ntTSL 3 BASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 AC098719.1-201ENSMUST00000228920 371 ntBASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Ear2-201ENSMUST00000074839 719 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Gm813-201ENSMUST00000099663 702 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Olfr1051-202ENSMUST00000216432 2807 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Olfr1051-203ENSMUST00000217245 2821 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Olfr1051-204ENSMUST00000217294 2840 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Olfr107-202ENSMUST00000215894 2512 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Olfr186-202ENSMUST00000206463 2208 ntAPPRIS P1 TSL 3 BASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Gm37626-201ENSMUST00000194332 4563 ntBASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Gm44438-201ENSMUST00000204388 3236 ntBASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Olfr728-202ENSMUST00000213685 7087 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Gm44682-201ENSMUST00000208501 2614 ntBASIC4.42□□□□□ -1.7
Ddb1Q3U1J4 Ccdc73-201ENSMUST00000111114 3944 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 Serpina7-201ENSMUST00000033626 2330 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 Olfr1277-202ENSMUST00000214760 5944 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 Gm37320-201ENSMUST00000192781 4953 ntBASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 Lrp1b-201ENSMUST00000052550 16294 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 Gm13650-201ENSMUST00000117729 433 ntBASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 Gm12515-201ENSMUST00000120116 361 ntBASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 Gm20681-201ENSMUST00000176061 503 ntTSL 2 BASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 Gm22633-201ENSMUST00000179834 107 ntBASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 Gm38050-201ENSMUST00000191904 238 ntBASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 AC154296.2-201ENSMUST00000214696 545 ntBASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 AC153564.2-201ENSMUST00000219464 273 ntBASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 AC139376.1-201ENSMUST00000220056 1250 ntBASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 AC108416.2-201ENSMUST00000226792 367 ntBASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 Gm26449-201ENSMUST00000082452 104 ntBASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 Gm14305-202ENSMUST00000108981 1646 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 Gm37879-201ENSMUST00000193112 1995 ntBASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 P2ry10-202ENSMUST00000118666 2757 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 Macf1-206ENSMUST00000106224 23402 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
Ddb1Q3U1J4 Gm14440-202ENSMUST00000109051 3382 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
Ddb1Q3U1J4 Olfr933-202ENSMUST00000216238 4475 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.7
Ddb1Q3U1J4 Elavl4-202ENSMUST00000102723 4024 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
Ddb1Q3U1J4 Gm37387-201ENSMUST00000192201 1806 ntBASIC4.4□□□□□ -1.7
Ddb1Q3U1J4 Gm26396-201ENSMUST00000104093 132 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm12837-201ENSMUST00000120131 373 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm15190-201ENSMUST00000120855 276 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm14581-201ENSMUST00000121726 198 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm12071-201ENSMUST00000121968 469 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm14100-201ENSMUST00000125575 651 ntTSL 3 BASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm16351-201ENSMUST00000142008 250 ntTSL 3 BASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm24240-201ENSMUST00000157785 135 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm24419-201ENSMUST00000157875 332 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm25335-201ENSMUST00000158043 103 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm23024-201ENSMUST00000158770 292 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm17119-201ENSMUST00000163943 280 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm21726-201ENSMUST00000179654 392 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm27783-201ENSMUST00000183534 105 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm28030-201ENSMUST00000184987 138 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm19193-201ENSMUST00000190263 590 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm37523-201ENSMUST00000194901 412 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm44964-201ENSMUST00000207011 273 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 CT025606.1-201ENSMUST00000218273 324 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 AC124537.1-201ENSMUST00000222890 159 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 AC104832.1-201ENSMUST00000222938 550 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 AC113031.5-201ENSMUST00000227116 606 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Olfr898-202ENSMUST00000216304 3979 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Gm44164-201ENSMUST00000203605 2561 ntBASIC4.4□□□□□ -1.71
Ddb1Q3U1J4 Mmp1b-201ENSMUST00000047888 1449 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
Ddb1Q3U1J4 Vmn1r89-203ENSMUST00000227176 4189 ntAPPRIS P2 BASIC4.39□□□□□ -1.71
Ddb1Q3U1J4 Gm22472-201ENSMUST00000104115 134 ntBASIC4.39□□□□□ -1.71
Ddb1Q3U1J4 Gm13475-201ENSMUST00000119290 234 ntBASIC4.39□□□□□ -1.71
Ddb1Q3U1J4 Gm14586-201ENSMUST00000119571 408 ntBASIC4.39□□□□□ -1.71
Ddb1Q3U1J4 Gm12640-201ENSMUST00000120097 310 ntBASIC4.39□□□□□ -1.71
Ddb1Q3U1J4 Gm8244-201ENSMUST00000121254 264 ntBASIC4.39□□□□□ -1.71
Ddb1Q3U1J4 n-R5s45-201ENSMUST00000122592 110 ntBASIC4.39□□□□□ -1.71
Ddb1Q3U1J4 Gm16068-201ENSMUST00000136557 504 ntTSL 3 BASIC4.39□□□□□ -1.71
Ddb1Q3U1J4 Gm15969-201ENSMUST00000151967 236 ntTSL 3 BASIC4.39□□□□□ -1.71
Ddb1Q3U1J4 Gm17218-201ENSMUST00000165911 410 ntTSL 3 BASIC4.39□□□□□ -1.71
Ddb1Q3U1J4 Obox4-ps35-201ENSMUST00000173825 680 ntTSL 3 BASIC4.39□□□□□ -1.71
Ddb1Q3U1J4 Gm26092-201ENSMUST00000179798 97 ntBASIC4.39□□□□□ -1.71
Ddb1Q3U1J4 Mir669a-1-201ENSMUST00000180238 97 ntBASIC4.39□□□□□ -1.71
Ddb1Q3U1J4 Mrgprb1-202ENSMUST00000188095 472 ntTSL 3 BASIC4.39□□□□□ -1.71
Ddb1Q3U1J4 Gm6651-201ENSMUST00000189471 271 ntBASIC4.39□□□□□ -1.71
Ddb1Q3U1J4 Gm32447-201ENSMUST00000194265 697 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 76,532 protein–RNA pairs in 73.1 ms