Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 AI504432-201ENSMUST00000070085 5569 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Olfr1028-201ENSMUST00000080698 3474 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Obscn-201ENSMUST00000020732 23483 ntTSL 5 BASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Cbll1-201ENSMUST00000064240 3937 ntAPPRIS ALT1 TSL 5 BASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm22656-201ENSMUST00000104199 171 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm11859-201ENSMUST00000118099 455 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm14765-201ENSMUST00000121954 326 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm13793-201ENSMUST00000124214 438 ntTSL 2 BASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm12150-201ENSMUST00000130874 468 ntTSL 3 BASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm24784-201ENSMUST00000157640 62 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm16572-201ENSMUST00000160258 279 ntTSL 3 BASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Mir3092-201ENSMUST00000174954 96 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm23402-201ENSMUST00000178130 107 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm21775-201ENSMUST00000178669 540 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm25314-201ENSMUST00000178810 79 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm24464-201ENSMUST00000179697 107 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm26189-201ENSMUST00000179879 107 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 2310010J17Rik-201ENSMUST00000181189 490 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm26871-205ENSMUST00000181926 742 ntTSL 3 BASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm28781-201ENSMUST00000185760 696 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm28740-201ENSMUST00000186142 215 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm29307-201ENSMUST00000187367 696 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Rhoay-ps3-201ENSMUST00000187648 576 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm29339-201ENSMUST00000189613 696 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm29407-201ENSMUST00000191468 696 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm42850-201ENSMUST00000202094 201 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm29848-201ENSMUST00000203107 295 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm19366-201ENSMUST00000206996 156 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 AL929417.1-201ENSMUST00000214901 124 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 CT009711.3-201ENSMUST00000225882 250 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Efcab9-201ENSMUST00000054327 754 ntAPPRIS P2 TSL 1 (best) BASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm10717-201ENSMUST00000075573 684 ntTSL 5 BASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm22249-201ENSMUST00000082485 136 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Snord14e-201ENSMUST00000082857 90 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm24037-201ENSMUST00000082871 180 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm23645-201ENSMUST00000083228 108 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Gm25512-201ENSMUST00000083863 107 ntBASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Ddi1-201ENSMUST00000051706 7114 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 2810403D21Rik-202ENSMUST00000124329 1660 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 4930533N22Rik-201ENSMUST00000206433 3509 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
Ddb1Q3U1J4 Olfr213-202ENSMUST00000220008 4020 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 CT010444.1-201ENSMUST00000219963 3845 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Olfr784-202ENSMUST00000214064 3119 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm5347-201ENSMUST00000210542 2327 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Olfr732-202ENSMUST00000213701 3862 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Dock11-203ENSMUST00000115266 6047 ntTSL 5 BASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm3443-201ENSMUST00000112772 285 ntAPPRIS P1 TSL 3 BASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm14594-201ENSMUST00000118052 537 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm14590-201ENSMUST00000118934 537 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm15377-201ENSMUST00000119594 246 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm13794-201ENSMUST00000148637 468 ntTSL 3 BASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm12801-201ENSMUST00000153228 263 ntTSL 3 BASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm22491-201ENSMUST00000157190 102 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm24898-201ENSMUST00000158133 106 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm26028-201ENSMUST00000158660 294 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm17919-201ENSMUST00000173344 312 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm14596-201ENSMUST00000180268 537 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm14595-201ENSMUST00000180335 537 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm26871-203ENSMUST00000181060 355 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm28623-201ENSMUST00000187219 192 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm28358-202ENSMUST00000189292 223 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm7182-201ENSMUST00000193351 732 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 B230207O21Rik-201ENSMUST00000198634 321 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm25203-202ENSMUST00000200458 216 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Tprkb-214ENSMUST00000202803 716 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm44076-201ENSMUST00000203072 520 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm39147-201ENSMUST00000211376 465 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 AC166358.10-201ENSMUST00000220556 144 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 CT025602.1-201ENSMUST00000227281 382 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Defb14-201ENSMUST00000052601 204 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm23515-201ENSMUST00000082829 107 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm25203-201ENSMUST00000082842 215 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Gm4017-201ENSMUST00000084813 338 ntBASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 AW112010-201ENSMUST00000099676 770 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Zfp518a-201ENSMUST00000050092 6840 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Tfpi-204ENSMUST00000111714 3614 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Olfr1226-207ENSMUST00000220416 3387 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
Ddb1Q3U1J4 Dock11-202ENSMUST00000115264 1725 ntTSL 5 BASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Glra3-201ENSMUST00000000275 6508 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Tfpi-203ENSMUST00000111711 3968 ntTSL 5 BASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Cyp3a25-201ENSMUST00000068317 2000 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Vmn2r106-201ENSMUST00000167464 2589 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Olfr1313-203ENSMUST00000216071 2599 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Olfr881-202ENSMUST00000212489 4237 ntAPPRIS P1 TSL 3 BASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Gm7853-201ENSMUST00000100708 478 ntBASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Gm12806-201ENSMUST00000119384 268 ntBASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 n-R5s192-201ENSMUST00000122577 119 ntBASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Gm15671-201ENSMUST00000124160 576 ntTSL 5 BASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Gm20794-201ENSMUST00000177626 628 ntBASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Gm25361-201ENSMUST00000179358 76 ntBASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Mir7118-201ENSMUST00000197760 61 ntBASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Gm29926-201ENSMUST00000201443 660 ntTSL 3 BASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Gm44274-201ENSMUST00000203417 256 ntBASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Gm45513-201ENSMUST00000210228 376 ntBASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Gm45438-201ENSMUST00000210242 564 ntBASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Gm45402-201ENSMUST00000211796 223 ntBASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Gm34408-201ENSMUST00000222104 655 ntTSL 5 BASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 AC154603.1-201ENSMUST00000224355 313 ntBASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Spink1-201ENSMUST00000025381 422 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
Ddb1Q3U1J4 Vmn1r230-201ENSMUST00000053974 951 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
Retrieved 100 of 76,532 protein–RNA pairs in 82.2 ms