Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Vmn2r59-201ENSMUST00000168489 2598 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
ShhQ62226 Olfr1016-202ENSMUST00000216425 2698 ntAPPRIS P1 TSL 3 BASIC3.49□□□□□ -1.85
ShhQ62226 Gm14696-201ENSMUST00000144294 3976 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
ShhQ62226 Gm13762-201ENSMUST00000144908 2612 ntAPPRIS P1 TSL 3 BASIC3.49□□□□□ -1.85
ShhQ62226 Gm10811-201ENSMUST00000221985 2448 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Trdv5-201ENSMUST00000103685 438 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
ShhQ62226 n-R5s219-201ENSMUST00000104328 132 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm15175-201ENSMUST00000117629 132 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm2066-201ENSMUST00000118046 389 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Rpl31-ps5-201ENSMUST00000118086 375 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm11849-201ENSMUST00000121293 261 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm12819-201ENSMUST00000122223 629 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm13368-201ENSMUST00000122443 430 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm3669-202ENSMUST00000127852 397 ntTSL 3 BASIC3.49□□□□□ -1.85
ShhQ62226 Gm2101-201ENSMUST00000128191 397 ntTSL 3 BASIC3.49□□□□□ -1.85
ShhQ62226 Ssxb6-201ENSMUST00000138642 518 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
ShhQ62226 Gm2165-205ENSMUST00000155337 397 ntTSL 3 BASIC3.49□□□□□ -1.85
ShhQ62226 Gm5935-202ENSMUST00000178986 639 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
ShhQ62226 Ifi213-205ENSMUST00000180215 643 ntAPPRIS P2 TSL 3 BASIC3.49□□□□□ -1.85
ShhQ62226 Gm27828-201ENSMUST00000184108 119 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm28591-201ENSMUST00000185259 183 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm28339-201ENSMUST00000185845 696 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm29380-201ENSMUST00000185898 416 ntTSL 5 BASIC3.49□□□□□ -1.85
ShhQ62226 Gm29062-201ENSMUST00000186032 694 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm29574-201ENSMUST00000186226 696 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm28828-201ENSMUST00000186601 696 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm28057-201ENSMUST00000186603 615 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm28896-201ENSMUST00000188609 696 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm28159-201ENSMUST00000190296 696 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm28179-203ENSMUST00000191382 544 ntTSL 5 BASIC3.49□□□□□ -1.85
ShhQ62226 Gm38107-201ENSMUST00000194873 696 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm33354-201ENSMUST00000195448 906 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm44391-201ENSMUST00000198490 93 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Igkv20-101-2-201ENSMUST00000200406 339 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
ShhQ62226 AC163646.2-201ENSMUST00000227962 141 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Gm28044-201ENSMUST00000044819 551 ntAPPRIS P1 TSL 3 BASIC3.49□□□□□ -1.85
ShhQ62226 Olfr835-201ENSMUST00000059315 936 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
ShhQ62226 Olfr1204-201ENSMUST00000078631 930 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
ShhQ62226 Gm25079-201ENSMUST00000082529 203 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Mir30e-201ENSMUST00000083475 92 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Prl2b1-201ENSMUST00000091678 891 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
ShhQ62226 Gm22365-201ENSMUST00000093750 117 ntBASIC3.49□□□□□ -1.85
ShhQ62226 Ccdc7b-201ENSMUST00000026912 1447 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
ShhQ62226 Mmp1b-201ENSMUST00000047888 1449 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
ShhQ62226 Omd-201ENSMUST00000065494 1556 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
ShhQ62226 Epyc-201ENSMUST00000020094 1723 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
ShhQ62226 Olfr1309-203ENSMUST00000214935 5448 ntAPPRIS P1 TSL 5 BASIC3.49□□□□□ -1.85
ShhQ62226 Macc1-204ENSMUST00000222058 4193 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
ShhQ62226 Nlrp4b-201ENSMUST00000047809 3274 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
ShhQ62226 Gm26696-201ENSMUST00000181941 2848 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Ugp2-202ENSMUST00000102875 2683 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
ShhQ62226 Olfr769-202ENSMUST00000215453 4143 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
ShhQ62226 AC153948.1-201ENSMUST00000219080 3838 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Olfr769-203ENSMUST00000216906 4325 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
ShhQ62226 Mkln1-201ENSMUST00000026699 11395 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
ShhQ62226 Mir669i-201ENSMUST00000117007 127 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Gm14987-201ENSMUST00000117820 676 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Gm11408-201ENSMUST00000117889 519 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Gm15613-201ENSMUST00000118396 326 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Gm11693-201ENSMUST00000119625 565 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Gm25807-201ENSMUST00000122783 305 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Gm24014-201ENSMUST00000157728 157 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Gm24546-201ENSMUST00000158652 102 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Gm22531-201ENSMUST00000158819 140 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Gm24418-201ENSMUST00000177597 79 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Gm24639-201ENSMUST00000178518 79 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Gm23076-201ENSMUST00000179082 79 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Gm25077-201ENSMUST00000179157 79 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Mir7050-201ENSMUST00000184636 60 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Gm29044-201ENSMUST00000188916 283 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
ShhQ62226 Gm37650-201ENSMUST00000193570 248 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
ShhQ62226 Gm38332-201ENSMUST00000194189 147 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Gm42850-201ENSMUST00000202094 201 ntBASIC3.48□□□□□ -1.85
ShhQ62226 Gm19726-201ENSMUST00000205008 240 ntBASIC3.48□□□□□ -1.85
ShhQ62226 AC159885.1-201ENSMUST00000222221 199 ntBASIC3.48□□□□□ -1.85
ShhQ62226 AL645546.1-201ENSMUST00000225001 189 ntBASIC3.48□□□□□ -1.85
ShhQ62226 AC163295.1-201ENSMUST00000227840 314 ntBASIC3.48□□□□□ -1.85
ShhQ62226 AW112010-201ENSMUST00000099676 770 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
ShhQ62226 Neb-203ENSMUST00000075301 21456 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
ShhQ62226 Olfr1043-203ENSMUST00000213949 1778 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
ShhQ62226 Gm5724-201ENSMUST00000148411 2449 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
ShhQ62226 Olfr733-203ENSMUST00000214756 3640 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
ShhQ62226 Gm4788-201ENSMUST00000027612 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
ShhQ62226 Olfr1277-202ENSMUST00000214760 5944 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
ShhQ62226 Gm7135-202ENSMUST00000191257 1905 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Gm14825-201ENSMUST00000113538 701 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Gm13831-201ENSMUST00000118764 302 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Gm14647-201ENSMUST00000119392 680 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Gm16303-201ENSMUST00000161498 390 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Gm20462-201ENSMUST00000172623 408 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Gm7909-201ENSMUST00000182688 614 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Gm27905-201ENSMUST00000184005 207 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Gm27733-201ENSMUST00000184803 68 ntBASIC3.47□□□□□ -1.85
ShhQ62226 1700025M24Rik-203ENSMUST00000191524 725 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
ShhQ62226 Gm37455-201ENSMUST00000191993 529 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Trbv24-201ENSMUST00000194614 347 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Gm43217-201ENSMUST00000199513 367 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Gm43472-201ENSMUST00000200175 154 ntBASIC3.47□□□□□ -1.85
ShhQ62226 Gm34838-201ENSMUST00000209231 958 ntTSL 5 BASIC3.47□□□□□ -1.85
ShhQ62226 Gm45459-201ENSMUST00000209882 442 ntTSL 5 BASIC3.47□□□□□ -1.85
Retrieved 100 of 76,532 protein–RNA pairs in 113 ms