Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Obox1-206ENSMUST00000181001 1217 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
Ccdc88bQ4QRL3 Gm44817-201ENSMUST00000205416 453 ntBASIC2.55□□□□□ -2
Ccdc88bQ4QRL3 Gm31294-201ENSMUST00000211216 138 ntTSL 5 BASIC2.55□□□□□ -2
Ccdc88bQ4QRL3 AC153568.1-201ENSMUST00000218165 341 ntTSL 2 BASIC2.55□□□□□ -2
Ccdc88bQ4QRL3 AC170086.1-201ENSMUST00000225190 497 ntBASIC2.55□□□□□ -2
Ccdc88bQ4QRL3 AC154426.1-201ENSMUST00000225614 1132 ntBASIC2.55□□□□□ -2
Ccdc88bQ4QRL3 Tas2r124-201ENSMUST00000076150 930 ntAPPRIS P1 BASIC2.55□□□□□ -2
Ccdc88bQ4QRL3 Olfr1166-202ENSMUST00000217575 2004 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
Ccdc88bQ4QRL3 Gm13409-201ENSMUST00000122072 546 ntBASIC2.54□□□□□ -2
Ccdc88bQ4QRL3 Gm22843-201ENSMUST00000157710 134 ntBASIC2.54□□□□□ -2
Ccdc88bQ4QRL3 Gm27493-201ENSMUST00000184128 78 ntBASIC2.54□□□□□ -2
Ccdc88bQ4QRL3 CT025552.1-201ENSMUST00000224561 521 ntBASIC2.54□□□□□ -2
Ccdc88bQ4QRL3 AC132881.2-201ENSMUST00000225474 709 ntBASIC2.54□□□□□ -2
Ccdc88bQ4QRL3 Mir196b-201ENSMUST00000083509 85 ntBASIC2.54□□□□□ -2
Ccdc88bQ4QRL3 Gm24445-201ENSMUST00000083981 107 ntBASIC2.54□□□□□ -2
Ccdc88bQ4QRL3 Gm22665-201ENSMUST00000158720 275 ntBASIC2.53□□□□□ -2
Ccdc88bQ4QRL3 Gm24677-201ENSMUST00000158755 150 ntBASIC2.53□□□□□ -2
Ccdc88bQ4QRL3 Gm25958-201ENSMUST00000175114 71 ntBASIC2.53□□□□□ -2
Ccdc88bQ4QRL3 B230112I24Rik-201ENSMUST00000203953 1229 ntBASIC2.53□□□□□ -2
Ccdc88bQ4QRL3 Fcf1-201ENSMUST00000021669 749 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
Ccdc88bQ4QRL3 Gm26126-201ENSMUST00000083188 164 ntBASIC2.53□□□□□ -2
Ccdc88bQ4QRL3 Mir10b-201ENSMUST00000083566 68 ntBASIC2.53□□□□□ -2
Ccdc88bQ4QRL3 Olfr730-202ENSMUST00000205837 4903 ntAPPRIS ALT1 BASIC2.53□□□□□ -2
Ccdc88bQ4QRL3 Olfr851-202ENSMUST00000214130 7123 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
Ccdc88bQ4QRL3 Olfr1289-201ENSMUST00000120021 1643 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
Ccdc88bQ4QRL3 Gm7171-201ENSMUST00000177413 1349 ntBASIC2.53□□□□□ -2
Ccdc88bQ4QRL3 Gm23015-201ENSMUST00000104145 128 ntBASIC2.52□□□□□ -2.01
Ccdc88bQ4QRL3 Rpl31-ps22-201ENSMUST00000117961 337 ntBASIC2.52□□□□□ -2.01
Ccdc88bQ4QRL3 Gm13755-201ENSMUST00000118509 305 ntBASIC2.52□□□□□ -2.01
Ccdc88bQ4QRL3 Gm24061-201ENSMUST00000157489 120 ntBASIC2.52□□□□□ -2.01
Ccdc88bQ4QRL3 Gm43731-201ENSMUST00000196150 666 ntTSL 3 BASIC2.52□□□□□ -2.01
Ccdc88bQ4QRL3 AC160930.1-201ENSMUST00000227194 337 ntBASIC2.52□□□□□ -2.01
Ccdc88bQ4QRL3 Gm37407-201ENSMUST00000194793 1316 ntBASIC2.52□□□□□ -2.01
Ccdc88bQ4QRL3 Olfr1218-203ENSMUST00000215048 3900 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
Ccdc88bQ4QRL3 Gm14736-201ENSMUST00000121470 336 ntBASIC2.52□□□□□ -2.01
Ccdc88bQ4QRL3 Gm14559-201ENSMUST00000121745 496 ntBASIC2.52□□□□□ -2.01
Ccdc88bQ4QRL3 Rgs2-204ENSMUST00000153527 588 ntTSL 2 BASIC2.52□□□□□ -2.01
Ccdc88bQ4QRL3 Gm23234-201ENSMUST00000157304 134 ntBASIC2.52□□□□□ -2.01
Ccdc88bQ4QRL3 Gm23558-201ENSMUST00000157823 80 ntBASIC2.52□□□□□ -2.01
Ccdc88bQ4QRL3 Gm7247-201ENSMUST00000162998 1157 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
Ccdc88bQ4QRL3 Gm17062-201ENSMUST00000166987 461 ntBASIC2.52□□□□□ -2.01
Ccdc88bQ4QRL3 Olfr808-201ENSMUST00000060636 939 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
Ccdc88bQ4QRL3 Il1rapl1-202ENSMUST00000113964 1936 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
Ccdc88bQ4QRL3 Vmn1r-ps141-201ENSMUST00000176293 753 ntBASIC2.51□□□□□ -2.01
Ccdc88bQ4QRL3 Mir6379-201ENSMUST00000183392 115 ntBASIC2.51□□□□□ -2.01
Ccdc88bQ4QRL3 Obox4-ps24-201ENSMUST00000197686 540 ntBASIC2.51□□□□□ -2.01
Ccdc88bQ4QRL3 Rab5a-ps-201ENSMUST00000203252 653 ntBASIC2.51□□□□□ -2.01
Ccdc88bQ4QRL3 4930431P19Rik-201ENSMUST00000207570 451 ntBASIC2.51□□□□□ -2.01
Ccdc88bQ4QRL3 Gm44548-201ENSMUST00000208929 192 ntBASIC2.51□□□□□ -2.01
Ccdc88bQ4QRL3 Gm12765-201ENSMUST00000117273 615 ntBASIC2.5□□□□□ -2.01
Ccdc88bQ4QRL3 Hmgb1-ps5-201ENSMUST00000121058 557 ntBASIC2.5□□□□□ -2.01
Ccdc88bQ4QRL3 Gm3848-201ENSMUST00000136693 299 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
Ccdc88bQ4QRL3 Gm9785-202ENSMUST00000144563 593 ntBASIC2.5□□□□□ -2.01
Ccdc88bQ4QRL3 Igkv13-61-1-201ENSMUST00000198255 296 ntBASIC2.5□□□□□ -2.01
Ccdc88bQ4QRL3 AC141895.1-201ENSMUST00000218141 273 ntBASIC2.5□□□□□ -2.01
Ccdc88bQ4QRL3 AC134468.1-201ENSMUST00000220869 299 ntTSL 5 BASIC2.5□□□□□ -2.01
Ccdc88bQ4QRL3 AC161572.1-201ENSMUST00000227486 640 ntBASIC2.5□□□□□ -2.01
Ccdc88bQ4QRL3 Olfr1472-201ENSMUST00000077501 945 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
Ccdc88bQ4QRL3 Gm13714-201ENSMUST00000117313 221 ntBASIC2.49□□□□□ -2.01
Ccdc88bQ4QRL3 Gm12448-201ENSMUST00000118852 655 ntBASIC2.49□□□□□ -2.01
Ccdc88bQ4QRL3 Gm13210-201ENSMUST00000121483 273 ntBASIC2.49□□□□□ -2.01
Ccdc88bQ4QRL3 Gm24770-201ENSMUST00000158505 92 ntBASIC2.49□□□□□ -2.01
Ccdc88bQ4QRL3 Gm2855-201ENSMUST00000166765 456 ntBASIC2.49□□□□□ -2.01
Ccdc88bQ4QRL3 Samd15-201ENSMUST00000169669 1194 ntBASIC2.49□□□□□ -2.01
Ccdc88bQ4QRL3 4930402F11Rik-203ENSMUST00000208289 606 ntTSL 3 BASIC2.49□□□□□ -2.01
Ccdc88bQ4QRL3 Gm26473-201ENSMUST00000116763 127 ntBASIC2.48□□□□□ -2.01
Ccdc88bQ4QRL3 Gm14841-201ENSMUST00000121067 758 ntBASIC2.48□□□□□ -2.01
Ccdc88bQ4QRL3 Gm14253-201ENSMUST00000122112 639 ntBASIC2.48□□□□□ -2.01
Ccdc88bQ4QRL3 Olfr1027-ps1-201ENSMUST00000122338 875 ntBASIC2.48□□□□□ -2.01
Ccdc88bQ4QRL3 Gm15632-201ENSMUST00000135936 246 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
Ccdc88bQ4QRL3 Gm27248-201ENSMUST00000184004 166 ntBASIC2.48□□□□□ -2.01
Ccdc88bQ4QRL3 Gm29406-201ENSMUST00000186400 235 ntTSL 5 BASIC2.48□□□□□ -2.01
Ccdc88bQ4QRL3 AC144628.2-201ENSMUST00000227374 352 ntBASIC2.48□□□□□ -2.01
Ccdc88bQ4QRL3 AC123658.1-201ENSMUST00000228364 867 ntBASIC2.48□□□□□ -2.01
Ccdc88bQ4QRL3 Olfr1314-201ENSMUST00000099598 939 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
Ccdc88bQ4QRL3 Gm10800-201ENSMUST00000099683 660 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
Ccdc88bQ4QRL3 Zfp953-201ENSMUST00000081582 4677 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
Ccdc88bQ4QRL3 Knl1-202ENSMUST00000028802 7800 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
Ccdc88bQ4QRL3 Vmn1r73-202ENSMUST00000226516 6155 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
Ccdc88bQ4QRL3 Ighv3-1-201ENSMUST00000103478 350 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
Ccdc88bQ4QRL3 Gm12386-201ENSMUST00000117380 688 ntBASIC2.47□□□□□ -2.01
Ccdc88bQ4QRL3 Gm6829-201ENSMUST00000119858 360 ntBASIC2.47□□□□□ -2.01
Ccdc88bQ4QRL3 Gm12383-201ENSMUST00000120628 760 ntBASIC2.47□□□□□ -2.01
Ccdc88bQ4QRL3 Gm37228-201ENSMUST00000193574 331 ntTSL 5 BASIC2.47□□□□□ -2.01
Ccdc88bQ4QRL3 Tas2r109-201ENSMUST00000067539 951 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
Ccdc88bQ4QRL3 AC116557.1-201ENSMUST00000219494 1521 ntBASIC2.47□□□□□ -2.01
Ccdc88bQ4QRL3 Gm7489-201ENSMUST00000100666 1222 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
Ccdc88bQ4QRL3 Gm13457-201ENSMUST00000117885 267 ntBASIC2.46□□□□□ -2.02
Ccdc88bQ4QRL3 Gm14525-201ENSMUST00000119649 893 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
Ccdc88bQ4QRL3 Gm11357-201ENSMUST00000119758 954 ntBASIC2.46□□□□□ -2.02
Ccdc88bQ4QRL3 Gm24783-201ENSMUST00000157639 100 ntBASIC2.46□□□□□ -2.02
Ccdc88bQ4QRL3 Olfr306-ps1-201ENSMUST00000174677 743 ntBASIC2.46□□□□□ -2.02
Ccdc88bQ4QRL3 Olfr1325-202ENSMUST00000216007 3617 ntAPPRIS ALT2 TSL 5 BASIC2.46□□□□□ -2.02
Ccdc88bQ4QRL3 Gm13273-201ENSMUST00000119737 159 ntBASIC2.45□□□□□ -2.02
Ccdc88bQ4QRL3 Gm27733-201ENSMUST00000184803 68 ntBASIC2.45□□□□□ -2.02
Ccdc88bQ4QRL3 Gm16976-205ENSMUST00000227324 226 ntBASIC2.45□□□□□ -2.02
Ccdc88bQ4QRL3 Olfr204-201ENSMUST00000072517 918 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
Ccdc88bQ4QRL3 Gm44624-201ENSMUST00000208700 2278 ntBASIC2.45□□□□□ -2.02
Ccdc88bQ4QRL3 Olfr1442-203ENSMUST00000208494 3593 ntAPPRIS P1 TSL 3 BASIC2.45□□□□□ -2.02
Ccdc88bQ4QRL3 Gm23783-201ENSMUST00000157941 102 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 76,532 protein–RNA pairs in 72.8 ms