Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Olfr112-201ENSMUST00000085548 3103 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
ShhQ62226 Gm28154-201ENSMUST00000186267 4218 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
ShhQ62226 Olfr1454-204ENSMUST00000217568 4215 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
ShhQ62226 Olfr913-201ENSMUST00000081095 2441 ntAPPRIS P1 TSL 3 BASIC3.51□□□□□ -1.85
ShhQ62226 Gm14973-201ENSMUST00000117248 255 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm14868-201ENSMUST00000117840 216 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm13511-201ENSMUST00000121167 363 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm14694-201ENSMUST00000121856 282 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm13868-201ENSMUST00000122411 294 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm24627-201ENSMUST00000122764 138 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm13752-201ENSMUST00000138195 491 ntTSL 5 BASIC3.51□□□□□ -1.85
ShhQ62226 Gm6058-201ENSMUST00000154261 399 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm24138-201ENSMUST00000157572 114 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm22849-201ENSMUST00000157713 307 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm25335-201ENSMUST00000158043 103 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm25835-201ENSMUST00000158917 144 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm6264-202ENSMUST00000162896 1217 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Mir3070b-201ENSMUST00000175205 89 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Fam107b-206ENSMUST00000176254 300 ntTSL 5 BASIC3.51□□□□□ -1.85
ShhQ62226 Vmn2r-ps132-201ENSMUST00000176738 651 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Trav7d-4-201ENSMUST00000178768 451 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
ShhQ62226 Trav7-4-201ENSMUST00000181728 451 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
ShhQ62226 Gm27952-201ENSMUST00000184748 105 ntBASIC3.51□□□□□ -1.85
ShhQ62226 BE692007-203ENSMUST00000189306 362 ntTSL 3 BASIC3.51□□□□□ -1.85
ShhQ62226 Gm37568-201ENSMUST00000191755 364 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm37399-201ENSMUST00000195224 416 ntBASIC3.51□□□□□ -1.85
ShhQ62226 4930511M18Rik-201ENSMUST00000197811 679 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
ShhQ62226 Gm43976-201ENSMUST00000203637 235 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm44687-201ENSMUST00000204975 235 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Snhg1-208ENSMUST00000206029 408 ntTSL 3 BASIC3.51□□□□□ -1.85
ShhQ62226 Gm44513-201ENSMUST00000206811 439 ntBASIC3.51□□□□□ -1.85
ShhQ62226 AC139376.1-201ENSMUST00000220056 1250 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Zmynd11-223ENSMUST00000222358 340 ntTSL 5 BASIC3.51□□□□□ -1.85
ShhQ62226 AC161572.1-201ENSMUST00000227486 640 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Tmsb15a-201ENSMUST00000073674 299 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
ShhQ62226 Gm23627-201ENSMUST00000082459 107 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm22502-201ENSMUST00000082488 107 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm22977-201ENSMUST00000082615 107 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm24623-201ENSMUST00000082616 194 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm24149-201ENSMUST00000082757 107 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm23932-201ENSMUST00000082914 107 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm26263-201ENSMUST00000083281 164 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Olfr1253-202ENSMUST00000213484 4812 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
ShhQ62226 1810006J02Rik-201ENSMUST00000186473 1687 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
ShhQ62226 A230057D06Rik-202ENSMUST00000207061 3717 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
ShhQ62226 Ddx60-201ENSMUST00000070631 6535 ntAPPRIS P2 TSL 5 BASIC3.51□□□□□ -1.85
ShhQ62226 Gm15095-201ENSMUST00000118996 1430 ntBASIC3.51□□□□□ -1.85
ShhQ62226 A830011K09Rik-202ENSMUST00000162868 2201 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
ShhQ62226 Gm37672-201ENSMUST00000192682 4014 ntBASIC3.51□□□□□ -1.85
ShhQ62226 Gm14325-201ENSMUST00000108939 1576 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
ShhQ62226 Senp8-201ENSMUST00000051039 3682 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
ShhQ62226 Olfr986-202ENSMUST00000214763 3274 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
ShhQ62226 AC123035.1-201ENSMUST00000213846 2671 ntTSL 5 BASIC3.5□□□□□ -1.85
ShhQ62226 Gm8473-201ENSMUST00000176697 1885 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Olfr1471-204ENSMUST00000217249 1662 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
ShhQ62226 Uty-208ENSMUST00000154004 4267 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
ShhQ62226 Vmn2r91-201ENSMUST00000172359 2571 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
ShhQ62226 Gm37478-201ENSMUST00000193624 3495 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Ighv1-47-201ENSMUST00000103518 294 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
ShhQ62226 Gm14541-201ENSMUST00000118985 157 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm13475-201ENSMUST00000119290 234 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm11229-201ENSMUST00000121993 437 ntBASIC3.5□□□□□ -1.85
ShhQ62226 n-R5s68-201ENSMUST00000122639 82 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Mir1934-201ENSMUST00000158127 83 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm23068-201ENSMUST00000158239 293 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm24930-201ENSMUST00000158315 83 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm24876-201ENSMUST00000158780 92 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm2862-201ENSMUST00000161524 328 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm20543-201ENSMUST00000174200 726 ntBASIC3.5□□□□□ -1.85
ShhQ62226 4930505G20Rik-201ENSMUST00000176582 561 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
ShhQ62226 Rpl48-ps1-201ENSMUST00000177147 556 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Snord116l14-201ENSMUST00000179875 94 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm26746-201ENSMUST00000181722 487 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm21960-201ENSMUST00000181924 452 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm27599-201ENSMUST00000183758 174 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Mir6372-201ENSMUST00000185114 109 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm29591-201ENSMUST00000188215 357 ntTSL 5 BASIC3.5□□□□□ -1.85
ShhQ62226 Smcp-202ENSMUST00000194965 744 ntAPPRIS P1 TSL 3 BASIC3.5□□□□□ -1.85
ShhQ62226 Cyp3a63-ps-201ENSMUST00000196626 1170 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm43475-201ENSMUST00000196673 400 ntTSL 2 BASIC3.5□□□□□ -1.85
ShhQ62226 Traj57-202ENSMUST00000196977 63 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
ShhQ62226 Gm19147-201ENSMUST00000199622 652 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm34091-201ENSMUST00000200875 604 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm45327-201ENSMUST00000211612 565 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Olfr1064-ps1-201ENSMUST00000213670 600 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm20102-201ENSMUST00000222445 220 ntBASIC3.5□□□□□ -1.85
ShhQ62226 AC133517.1-202ENSMUST00000224409 233 ntBASIC3.5□□□□□ -1.85
ShhQ62226 AC166095.1-203ENSMUST00000224591 233 ntBASIC3.5□□□□□ -1.85
ShhQ62226 CT009711.3-201ENSMUST00000225882 250 ntBASIC3.5□□□□□ -1.85
ShhQ62226 S100a11-201ENSMUST00000029515 511 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
ShhQ62226 Defb8-201ENSMUST00000033854 287 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
ShhQ62226 Olfr769-201ENSMUST00000050915 1084 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
ShhQ62226 Olfr305-201ENSMUST00000069236 960 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
ShhQ62226 Olfr497-201ENSMUST00000076406 945 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
ShhQ62226 Mir26a-1-201ENSMUST00000083579 90 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm22154-201ENSMUST00000083844 131 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Gm26111-201ENSMUST00000083969 106 ntBASIC3.5□□□□□ -1.85
ShhQ62226 Ccdc73-201ENSMUST00000111114 3944 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
ShhQ62226 Olfr109-204ENSMUST00000217602 5437 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
ShhQ62226 Gm15261-201ENSMUST00000136779 2763 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
Retrieved 100 of 76,532 protein–RNA pairs in 77.3 ms