Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm30175-201ENSMUST00000194173 615 ntBASIC5.35□□□□□ -1.55
Rnf40Q3U319 Gm38107-201ENSMUST00000194873 696 ntBASIC5.35□□□□□ -1.55
Rnf40Q3U319 Gm30858-201ENSMUST00000195516 615 ntBASIC5.35□□□□□ -1.55
Rnf40Q3U319 Hcfc1r1-ps2-201ENSMUST00000199379 339 ntBASIC5.35□□□□□ -1.55
Rnf40Q3U319 Gm45494-201ENSMUST00000211167 545 ntTSL 3 BASIC5.35□□□□□ -1.55
Rnf40Q3U319 AC123705.4-203ENSMUST00000221566 380 ntTSL 3 BASIC5.35□□□□□ -1.55
Rnf40Q3U319 Defb21-201ENSMUST00000070722 427 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
Rnf40Q3U319 Mir338-201ENSMUST00000083666 98 ntBASIC5.35□□□□□ -1.55
Rnf40Q3U319 Arpp21-231ENSMUST00000178410 3419 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
Rnf40Q3U319 Prune2-201ENSMUST00000087689 12512 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
Rnf40Q3U319 Steap2-209ENSMUST00000164219 10089 ntAPPRIS P1 TSL 3 BASIC5.35□□□□□ -1.55
Rnf40Q3U319 Olfr1243-202ENSMUST00000144885 3148 ntAPPRIS P1 TSL 3 BASIC5.35□□□□□ -1.55
Rnf40Q3U319 1700006A11Rik-201ENSMUST00000029598 2161 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
Rnf40Q3U319 Slc22a22-201ENSMUST00000022995 2015 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
Rnf40Q3U319 Btbd35f14-201ENSMUST00000105117 1701 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
Rnf40Q3U319 Btbd35f13-201ENSMUST00000177912 1701 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
Rnf40Q3U319 Vmn1r185-205ENSMUST00000227461 5318 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
Rnf40Q3U319 Vmn1r43-204ENSMUST00000226983 12805 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
Rnf40Q3U319 Cdr1-201ENSMUST00000166381 2313 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
Rnf40Q3U319 Gm24709-201ENSMUST00000104123 132 ntBASIC5.34□□□□□ -1.55
Rnf40Q3U319 Hmgn2l6-201ENSMUST00000115986 267 ntBASIC5.34□□□□□ -1.55
Rnf40Q3U319 Gm14073-201ENSMUST00000117344 381 ntBASIC5.34□□□□□ -1.55
Rnf40Q3U319 n-R5s61-201ENSMUST00000122711 118 ntBASIC5.34□□□□□ -1.55
Rnf40Q3U319 Gm26490-201ENSMUST00000157879 140 ntBASIC5.34□□□□□ -1.55
Rnf40Q3U319 Gm23225-201ENSMUST00000158121 114 ntBASIC5.34□□□□□ -1.55
Rnf40Q3U319 Gm7008-203ENSMUST00000171356 476 ntTSL 2 BASIC5.34□□□□□ -1.55
Rnf40Q3U319 S100a2-201ENSMUST00000179550 315 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
Rnf40Q3U319 Mir7020-201ENSMUST00000183787 70 ntBASIC5.34□□□□□ -1.55
Rnf40Q3U319 Gm29668-201ENSMUST00000187802 315 ntBASIC5.34□□□□□ -1.55
Rnf40Q3U319 Gm43028-201ENSMUST00000202561 481 ntBASIC5.34□□□□□ -1.55
Rnf40Q3U319 Gm44182-201ENSMUST00000204052 115 ntBASIC5.34□□□□□ -1.55
Rnf40Q3U319 AC140785.1-201ENSMUST00000217782 383 ntBASIC5.34□□□□□ -1.55
Rnf40Q3U319 AC108401.1-201ENSMUST00000219740 361 ntTSL 3 BASIC5.34□□□□□ -1.55
Rnf40Q3U319 AC154636.1-201ENSMUST00000223226 126 ntBASIC5.34□□□□□ -1.55
Rnf40Q3U319 Anapc13-201ENSMUST00000038673 411 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
Rnf40Q3U319 Defb39-201ENSMUST00000075504 252 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
Rnf40Q3U319 Gm25651-201ENSMUST00000083782 119 ntBASIC5.34□□□□□ -1.55
Rnf40Q3U319 Olfr111-202ENSMUST00000214259 2620 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
Rnf40Q3U319 Zfp950-204ENSMUST00000143264 4825 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
Rnf40Q3U319 Dbpht2-202ENSMUST00000221311 5341 ntBASIC5.33□□□□□ -1.56
Rnf40Q3U319 Ogt-202ENSMUST00000119299 3840 ntAPPRIS ALT1 TSL 5 BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Trim12c-201ENSMUST00000059037 3740 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Rnf40Q3U319 CT009754.2-201ENSMUST00000221683 3661 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Arrdc3-205ENSMUST00000161441 1908 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Tmem71-201ENSMUST00000048372 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Nexn-212ENSMUST00000199470 2392 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Olfr1223-201ENSMUST00000217342 2333 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Mir450b-201ENSMUST00000102095 82 ntBASIC5.33□□□□□ -1.56
Rnf40Q3U319 Gm12793-201ENSMUST00000119268 292 ntBASIC5.33□□□□□ -1.56
Rnf40Q3U319 Gm12150-201ENSMUST00000130874 468 ntTSL 3 BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Gm21973-201ENSMUST00000157020 358 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Gm26404-201ENSMUST00000158498 109 ntBASIC5.33□□□□□ -1.56
Rnf40Q3U319 Gm7241-201ENSMUST00000159853 357 ntBASIC5.33□□□□□ -1.56
Rnf40Q3U319 Mir7674-201ENSMUST00000184964 63 ntBASIC5.33□□□□□ -1.56
Rnf40Q3U319 Olfr454-ps1-201ENSMUST00000205206 348 ntBASIC5.33□□□□□ -1.56
Rnf40Q3U319 Gm44583-201ENSMUST00000207478 281 ntBASIC5.33□□□□□ -1.56
Rnf40Q3U319 Gm3086-202ENSMUST00000221248 310 ntBASIC5.33□□□□□ -1.56
Rnf40Q3U319 1700112M02Rik-201ENSMUST00000221719 348 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Gm10112-201ENSMUST00000075226 354 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Gm22155-201ENSMUST00000083836 162 ntBASIC5.33□□□□□ -1.56
Rnf40Q3U319 AC160931.3-201ENSMUST00000222111 2267 ntBASIC5.33□□□□□ -1.56
Rnf40Q3U319 Plcz1-201ENSMUST00000032356 2271 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Gm43185-201ENSMUST00000197507 2775 ntBASIC5.33□□□□□ -1.56
Rnf40Q3U319 Vmn1r171-205ENSMUST00000226771 2718 ntAPPRIS ALT2 BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Neurod4-201ENSMUST00000061571 3345 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Btbd35f28-201ENSMUST00000105015 1960 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Btbd35f18-201ENSMUST00000105019 1960 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Btbd35f11-201ENSMUST00000105020 1960 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Btbd35f19-201ENSMUST00000178444 1960 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Btbd35f20-201ENSMUST00000179325 1960 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Vmn1r71-204ENSMUST00000227702 5034 ntAPPRIS P2 BASIC5.33□□□□□ -1.56
Rnf40Q3U319 Gm37514-201ENSMUST00000194512 2753 ntBASIC5.33□□□□□ -1.56
Rnf40Q3U319 Olfr1016-203ENSMUST00000217410 2738 ntAPPRIS P1 TSL 3 BASIC5.32□□□□□ -1.56
Rnf40Q3U319 Vmn2r110-201ENSMUST00000169559 2577 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
Rnf40Q3U319 Cdh12-201ENSMUST00000075132 5636 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Rnf40Q3U319 Ulbp1-203ENSMUST00000218087 5959 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
Rnf40Q3U319 Spink5-201ENSMUST00000069245 4785 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Rnf40Q3U319 Hrnr-202ENSMUST00000093774 11187 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
Rnf40Q3U319 n-R5s98-201ENSMUST00000122549 119 ntBASIC5.32□□□□□ -1.56
Rnf40Q3U319 Gm26414-201ENSMUST00000157674 269 ntBASIC5.32□□□□□ -1.56
Rnf40Q3U319 Gm22845-201ENSMUST00000157712 104 ntBASIC5.32□□□□□ -1.56
Rnf40Q3U319 Gm24687-201ENSMUST00000157758 241 ntBASIC5.32□□□□□ -1.56
Rnf40Q3U319 Gm23641-201ENSMUST00000157857 101 ntBASIC5.32□□□□□ -1.56
Rnf40Q3U319 H3f3aos-202ENSMUST00000159740 229 ntTSL 5 BASIC5.32□□□□□ -1.56
Rnf40Q3U319 Gm27688-201ENSMUST00000183634 91 ntBASIC5.32□□□□□ -1.56
Rnf40Q3U319 Gm37609-201ENSMUST00000191778 678 ntBASIC5.32□□□□□ -1.56
Rnf40Q3U319 Gm38171-201ENSMUST00000195716 478 ntTSL 3 BASIC5.32□□□□□ -1.56
Rnf40Q3U319 Gm18462-201ENSMUST00000208112 417 ntBASIC5.32□□□□□ -1.56
Rnf40Q3U319 Gm18467-201ENSMUST00000208805 434 ntBASIC5.32□□□□□ -1.56
Rnf40Q3U319 AC160984.2-201ENSMUST00000224927 791 ntBASIC5.32□□□□□ -1.56
Rnf40Q3U319 Gm23847-201ENSMUST00000083829 110 ntBASIC5.32□□□□□ -1.56
Rnf40Q3U319 Stag2-201ENSMUST00000069619 5825 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
Rnf40Q3U319 Olfr1487-205ENSMUST00000217061 4080 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
Rnf40Q3U319 Olfr920-201ENSMUST00000074740 5711 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
Rnf40Q3U319 Zfp458-204ENSMUST00000225772 3485 ntAPPRIS ALT2 BASIC5.31□□□□□ -1.56
Rnf40Q3U319 4932411N23Rik-201ENSMUST00000081074 3407 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
Rnf40Q3U319 4932438A13Rik-217ENSMUST00000152564 15541 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
Rnf40Q3U319 Rps12-ps26-201ENSMUST00000117751 333 ntBASIC5.31□□□□□ -1.56
Rnf40Q3U319 Gm14551-201ENSMUST00000120802 256 ntBASIC5.31□□□□□ -1.56
Rnf40Q3U319 Gm13174-201ENSMUST00000126141 220 ntTSL 3 BASIC5.31□□□□□ -1.56
Retrieved 100 of 76,532 protein–RNA pairs in 99.5 ms