| Hoxa3 | P02831 | Hdx-201 | ENSMUST00000038472 | 9385 nt | TSL 1 (best) BASIC | 3.43 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | AC126673.1-201 | ENSMUST00000223208 | 3856 nt | BASIC | 3.43 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm14541-201 | ENSMUST00000118985 | 157 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Scgb1b26-ps-201 | ENSMUST00000121845 | 291 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm25341-201 | ENSMUST00000157461 | 268 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm22156-201 | ENSMUST00000158409 | 141 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm17072-201 | ENSMUST00000166673 | 658 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm3027-201 | ENSMUST00000167579 | 451 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm21842-201 | ENSMUST00000177552 | 498 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm21626-201 | ENSMUST00000177791 | 498 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm21562-201 | ENSMUST00000177888 | 498 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm21539-201 | ENSMUST00000177925 | 498 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Vmn2r-ps18-201 | ENSMUST00000177972 | 380 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm21599-201 | ENSMUST00000178249 | 498 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm21914-201 | ENSMUST00000178452 | 498 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm21723-201 | ENSMUST00000178692 | 498 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm21916-201 | ENSMUST00000178771 | 498 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm21801-201 | ENSMUST00000178865 | 498 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm21633-201 | ENSMUST00000178941 | 498 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm21821-201 | ENSMUST00000179646 | 498 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm21588-201 | ENSMUST00000180074 | 498 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm21780-201 | ENSMUST00000180128 | 498 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm21572-201 | ENSMUST00000180134 | 498 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm21529-201 | ENSMUST00000180175 | 498 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Mir6938-201 | ENSMUST00000184173 | 63 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm27608-201 | ENSMUST00000184822 | 162 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm8600-201 | ENSMUST00000186320 | 905 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm29370-202 | ENSMUST00000187476 | 499 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm38127-201 | ENSMUST00000191978 | 468 nt | TSL 5 BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm37898-201 | ENSMUST00000193781 | 174 nt | TSL 1 (best) BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | 2010110G14Rik-201 | ENSMUST00000196438 | 527 nt | TSL 5 BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm44409-201 | ENSMUST00000198810 | 166 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm44521-201 | ENSMUST00000206469 | 217 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Olfr1269-203 | ENSMUST00000216493 | 3827 nt | APPRIS P1 TSL 5 BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | AC102312.1-201 | ENSMUST00000217752 | 475 nt | TSL 3 BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Kap-201 | ENSMUST00000048032 | 707 nt | APPRIS P2 TSL 1 (best) BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Olfr1459-201 | ENSMUST00000078299 | 1102 nt | APPRIS P1 BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Mir21a-201 | ENSMUST00000083521 | 92 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm6361-201 | ENSMUST00000091031 | 435 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Olfr1340-201 | ENSMUST00000094834 | 951 nt | APPRIS P1 BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Olfr744-203 | ENSMUST00000216690 | 1765 nt | APPRIS P1 TSL 5 BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Olfr1249-202 | ENSMUST00000216124 | 3047 nt | APPRIS P1 TSL 5 BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm13630-201 | ENSMUST00000127849 | 3650 nt | TSL 1 (best) BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Txndc9-204 | ENSMUST00000193832 | 3472 nt | TSL 2 BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Adam26a-201 | ENSMUST00000049577 | 2489 nt | APPRIS P1 TSL 1 (best) BASIC | 3.42 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Olfr711-201 | ENSMUST00000051715 | 3035 nt | APPRIS P1 TSL 2 BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Olfr902-202 | ENSMUST00000213105 | 2113 nt | APPRIS P1 TSL 5 BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Abi3bp-204 | ENSMUST00000171000 | 3877 nt | APPRIS ALT2 TSL 1 (best) BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Olfr1183-203 | ENSMUST00000219871 | 8353 nt | APPRIS P1 TSL 5 BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Vmn2r101-201 | ENSMUST00000171914 | 2574 nt | APPRIS P1 TSL 5 BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Olfr1052-203 | ENSMUST00000217166 | 1694 nt | APPRIS P1 TSL 5 BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm22472-201 | ENSMUST00000104115 | 134 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Mir669g-201 | ENSMUST00000116809 | 123 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm14473-201 | ENSMUST00000122269 | 557 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm22107-201 | ENSMUST00000122548 | 100 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm23214-201 | ENSMUST00000122716 | 157 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm22561-201 | ENSMUST00000157331 | 84 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm24503-201 | ENSMUST00000158454 | 135 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm23579-201 | ENSMUST00000158528 | 103 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm24552-201 | ENSMUST00000158646 | 103 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm22135-201 | ENSMUST00000158752 | 108 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm6264-202 | ENSMUST00000162896 | 1217 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm7953-201 | ENSMUST00000168278 | 469 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm14419-204 | ENSMUST00000178182 | 192 nt | TSL 1 (best) BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm2004-202 | ENSMUST00000178872 | 192 nt | TSL 1 (best) BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm14295-203 | ENSMUST00000179435 | 192 nt | TSL 5 BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm23816-201 | ENSMUST00000179617 | 132 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm21960-201 | ENSMUST00000181924 | 452 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Ranbp2-ps6-201 | ENSMUST00000183722 | 381 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Mir6996-201 | ENSMUST00000183922 | 61 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm8296-201 | ENSMUST00000185597 | 524 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm28271-201 | ENSMUST00000191369 | 351 nt | TSL 3 BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Olfr428-ps1-201 | ENSMUST00000201135 | 466 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm44063-201 | ENSMUST00000203307 | 376 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Vmn1r-ps13-201 | ENSMUST00000204697 | 134 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Klk1b18-ps-201 | ENSMUST00000205780 | 167 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm45600-201 | ENSMUST00000210828 | 234 nt | TSL 5 BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | AC160134.1-201 | ENSMUST00000213450 | 551 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | CAAA01090811.1-201 | ENSMUST00000216828 | 277 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | AC154276.2-201 | ENSMUST00000227707 | 309 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm28044-201 | ENSMUST00000044819 | 551 nt | APPRIS P1 TSL 3 BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Olfr348-201 | ENSMUST00000056865 | 942 nt | APPRIS P1 BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm26164-201 | ENSMUST00000083793 | 104 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | AC122840.2-201 | ENSMUST00000221030 | 2659 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Ccr2-202 | ENSMUST00000165984 | 3515 nt | APPRIS P1 BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Erbb4-201 | ENSMUST00000119142 | 11782 nt | APPRIS ALT1 TSL 5 BASIC | 3.41 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm42486-201 | ENSMUST00000200369 | 3486 nt | BASIC | 3.4 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Elavl2-208 | ENSMUST00000107120 | 4191 nt | TSL 5 BASIC | 3.4 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Olfr199-202 | ENSMUST00000214186 | 2728 nt | APPRIS P1 TSL 5 BASIC | 3.4 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Gm7452-202 | ENSMUST00000202891 | 3039 nt | BASIC | 3.4 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | 4932414N04Rik-204 | ENSMUST00000128259 | 3645 nt | APPRIS P1 TSL 1 (best) BASIC | 3.4 | □□□□□ -1.86 | | |
| Hoxa3 | P02831 | Igkv9-129-201 | ENSMUST00000103308 | 350 nt | APPRIS ALT2 BASIC | 3.4 | □□□□□ -1.87 | | |
| Hoxa3 | P02831 | Tcrg-V5-201 | ENSMUST00000103556 | 293 nt | APPRIS P1 BASIC | 3.4 | □□□□□ -1.87 | | |
| Hoxa3 | P02831 | Mir1193-201 | ENSMUST00000116761 | 121 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| Hoxa3 | P02831 | Gm26156-201 | ENSMUST00000116999 | 123 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| Hoxa3 | P02831 | Rpl30-ps10-201 | ENSMUST00000117119 | 347 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| Hoxa3 | P02831 | Rpl30-ps3-201 | ENSMUST00000117928 | 348 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| Hoxa3 | P02831 | Gm11577-201 | ENSMUST00000118030 | 737 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| Hoxa3 | P02831 | Gm12191-201 | ENSMUST00000118307 | 348 nt | BASIC | 3.4 | □□□□□ -1.87 | | |
| Hoxa3 | P02831 | Gm9703-201 | ENSMUST00000119573 | 343 nt | BASIC | 3.4 | □□□□□ -1.87 | | |