Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm37523-201ENSMUST00000194901 412 ntBASIC3.54□□□□□ -1.84
ShhQ62226 2210017I01Rik-201ENSMUST00000195278 822 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ShhQ62226 Gm43236-201ENSMUST00000197414 313 ntTSL 5 BASIC3.54□□□□□ -1.84
ShhQ62226 Gm44824-201ENSMUST00000207021 229 ntBASIC3.54□□□□□ -1.84
ShhQ62226 AC161054.1-201ENSMUST00000214319 184 ntBASIC3.54□□□□□ -1.84
ShhQ62226 CT025606.1-201ENSMUST00000218273 324 ntBASIC3.54□□□□□ -1.84
ShhQ62226 AC160962.2-201ENSMUST00000224761 632 ntBASIC3.54□□□□□ -1.84
ShhQ62226 Rpl26-ps2-201ENSMUST00000085379 435 ntBASIC3.54□□□□□ -1.84
ShhQ62226 Vmn1r49-203ENSMUST00000226368 6276 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
ShhQ62226 Gm37983-201ENSMUST00000193207 2006 ntBASIC3.54□□□□□ -1.84
ShhQ62226 Ccr1-201ENSMUST00000026911 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
ShhQ62226 Gm44438-201ENSMUST00000204388 3236 ntBASIC3.54□□□□□ -1.84
ShhQ62226 Vmn1r14-205ENSMUST00000227884 7542 ntAPPRIS P2 BASIC3.54□□□□□ -1.84
ShhQ62226 Gm6639-202ENSMUST00000196841 2666 ntTSL 5 BASIC3.53□□□□□ -1.84
ShhQ62226 Olfr910-201ENSMUST00000215122 1996 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
ShhQ62226 Gm44525-201ENSMUST00000183129 2634 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Cr2-212ENSMUST00000210219 4227 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
ShhQ62226 Gm42768-201ENSMUST00000197734 2897 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Mir673-201ENSMUST00000102361 91 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Gm26273-201ENSMUST00000104180 131 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Gm24889-201ENSMUST00000104388 132 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Gm14816-201ENSMUST00000117174 294 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Gm11386-201ENSMUST00000117761 347 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Gm12294-201ENSMUST00000119723 490 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Gm11582-201ENSMUST00000121041 236 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Gm14736-201ENSMUST00000121470 336 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Gm11645-201ENSMUST00000121589 649 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Gm12412-201ENSMUST00000121867 328 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Gm16068-201ENSMUST00000136557 504 ntTSL 3 BASIC3.53□□□□□ -1.84
ShhQ62226 Gm25436-201ENSMUST00000158275 145 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Slc9c1-201ENSMUST00000159945 3836 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
ShhQ62226 Rpl31-ps7-201ENSMUST00000180629 379 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Mir7081-201ENSMUST00000184490 75 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Gm27385-201ENSMUST00000184747 104 ntBASIC3.53□□□□□ -1.84
ShhQ62226 4930533P14Rik-201ENSMUST00000189056 583 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
ShhQ62226 Gm29423-207ENSMUST00000189580 255 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
ShhQ62226 Gm28506-201ENSMUST00000189937 150 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Gm44099-201ENSMUST00000203299 112 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Gm43994-201ENSMUST00000203809 227 ntTSL 5 BASIC3.53□□□□□ -1.84
ShhQ62226 1700027F06Rik-201ENSMUST00000203901 243 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
ShhQ62226 Gm45162-201ENSMUST00000209013 618 ntBASIC3.53□□□□□ -1.84
ShhQ62226 AC166343.1-201ENSMUST00000213261 577 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Gm18441-201ENSMUST00000223539 617 ntBASIC3.53□□□□□ -1.84
ShhQ62226 AC118006.1-201ENSMUST00000224211 501 ntBASIC3.53□□□□□ -1.84
ShhQ62226 CT025602.1-201ENSMUST00000227281 382 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Hamp-201ENSMUST00000062620 410 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
ShhQ62226 Gm10237-201ENSMUST00000078393 273 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Gm26055-201ENSMUST00000083038 107 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Gm5670-201ENSMUST00000093546 372 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Prl7a1-202ENSMUST00000095924 928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
ShhQ62226 Gm37777-201ENSMUST00000195546 3366 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Vmn1r22-202ENSMUST00000227650 3674 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
ShhQ62226 Olfr729-202ENSMUST00000213163 4283 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
ShhQ62226 Vmn1r30-205ENSMUST00000228635 1776 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
ShhQ62226 Oog1-203ENSMUST00000222332 1464 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
ShhQ62226 Gm43829-201ENSMUST00000196191 3802 ntBASIC3.53□□□□□ -1.84
ShhQ62226 Mctp1-202ENSMUST00000109589 1653 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
ShhQ62226 Olfr392-202ENSMUST00000144724 3904 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
ShhQ62226 Igkv7-33-201ENSMUST00000103376 362 ntAPPRIS ALT2 BASIC3.52□□□□□ -1.85
ShhQ62226 Gm25765-201ENSMUST00000104100 132 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Gm11009-201ENSMUST00000108961 417 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
ShhQ62226 Gm11576-201ENSMUST00000117433 417 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Gm11566-201ENSMUST00000118550 203 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Gm14307-201ENSMUST00000118930 291 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Gm9078-201ENSMUST00000119126 617 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Gm14297-201ENSMUST00000129110 291 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Gm12505-201ENSMUST00000146041 757 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
ShhQ62226 Gm23753-201ENSMUST00000157575 149 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Gm24240-201ENSMUST00000157785 135 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Gm26001-201ENSMUST00000157989 103 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Gm23016-201ENSMUST00000158431 62 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Gm3470-201ENSMUST00000160819 420 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Vmn2r-ps58-201ENSMUST00000173044 242 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Vmn2r-ps70-201ENSMUST00000174636 302 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Obox4-ps6-201ENSMUST00000176578 724 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Gm21746-201ENSMUST00000177612 543 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
ShhQ62226 Gm8247-202ENSMUST00000178759 375 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
ShhQ62226 Mpc1-ps-201ENSMUST00000181662 330 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Gm19498-201ENSMUST00000191128 331 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Topbp1-ps2-201ENSMUST00000191289 189 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Gm18956-201ENSMUST00000192857 480 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Gm37617-201ENSMUST00000194309 159 ntBASIC3.52□□□□□ -1.85
ShhQ62226 1700040K01Rik-201ENSMUST00000195145 438 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Gm30484-201ENSMUST00000200327 449 ntTSL 5 BASIC3.52□□□□□ -1.85
ShhQ62226 Gm44208-201ENSMUST00000205199 421 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Gm45455-202ENSMUST00000211156 630 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
ShhQ62226 Gm7751-201ENSMUST00000212868 709 ntBASIC3.52□□□□□ -1.85
ShhQ62226 CT030182.3-201ENSMUST00000225986 582 ntBASIC3.52□□□□□ -1.85
ShhQ62226 AC172751.1-201ENSMUST00000226887 440 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Olfr943-201ENSMUST00000071617 1079 ntAPPRIS P2 TSL 3 BASIC3.52□□□□□ -1.85
ShhQ62226 Mir128-1-201ENSMUST00000083586 70 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Olfr1156-201ENSMUST00000099842 1076 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
ShhQ62226 Erbin-205ENSMUST00000188997 5084 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
ShhQ62226 Mecom-203ENSMUST00000108271 3851 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
ShhQ62226 Vmn1r45-203ENSMUST00000227122 2861 ntBASIC3.52□□□□□ -1.85
ShhQ62226 Zc3h14-201ENSMUST00000021399 1430 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
ShhQ62226 Olfr516-203ENSMUST00000217279 1441 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
ShhQ62226 Olfr1469-202ENSMUST00000216910 4106 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
ShhQ62226 Vmn1r14-202ENSMUST00000227209 6857 ntAPPRIS ALT2 BASIC3.51□□□□□ -1.85
ShhQ62226 Olfr853-202ENSMUST00000213834 3888 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
Retrieved 100 of 76,532 protein–RNA pairs in 98.1 ms