Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 5430402E10Rik-201ENSMUST00000063127 798 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
Ccdc88bQ4QRL3 Snord14d-201ENSMUST00000083424 86 ntBASIC2.77□□□□□ -1.97
Ccdc88bQ4QRL3 Vmn1r178-202ENSMUST00000226450 2880 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
Ccdc88bQ4QRL3 Gm15087-201ENSMUST00000117465 1172 ntBASIC2.76□□□□□ -1.97
Ccdc88bQ4QRL3 Gm14541-201ENSMUST00000118985 157 ntBASIC2.76□□□□□ -1.97
Ccdc88bQ4QRL3 Gm21409-201ENSMUST00000186110 923 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
Ccdc88bQ4QRL3 Trav17-202ENSMUST00000186545 338 ntAPPRIS ALT2 BASIC2.76□□□□□ -1.97
Ccdc88bQ4QRL3 Rpl26-ps1-201ENSMUST00000213139 426 ntBASIC2.76□□□□□ -1.97
Ccdc88bQ4QRL3 Olfr951-201ENSMUST00000078531 945 ntAPPRIS P2 BASIC2.76□□□□□ -1.97
Ccdc88bQ4QRL3 Gm37661-201ENSMUST00000191863 1550 ntBASIC2.76□□□□□ -1.97
Ccdc88bQ4QRL3 Slco6c1-202ENSMUST00000189547 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
Ccdc88bQ4QRL3 Gm14404-201ENSMUST00000119117 1660 ntBASIC2.75□□□□□ -1.97
Ccdc88bQ4QRL3 Gm23340-201ENSMUST00000158955 123 ntBASIC2.75□□□□□ -1.97
Ccdc88bQ4QRL3 Gm28383-201ENSMUST00000187563 139 ntBASIC2.75□□□□□ -1.97
Ccdc88bQ4QRL3 Gm29262-201ENSMUST00000190084 196 ntBASIC2.75□□□□□ -1.97
Ccdc88bQ4QRL3 Gm44476-201ENSMUST00000196225 91 ntBASIC2.75□□□□□ -1.97
Ccdc88bQ4QRL3 AC154765.1-201ENSMUST00000217732 439 ntTSL 3 BASIC2.75□□□□□ -1.97
Ccdc88bQ4QRL3 AC147639.1-201ENSMUST00000224216 661 ntBASIC2.75□□□□□ -1.97
Ccdc88bQ4QRL3 AC158142.2-201ENSMUST00000227892 635 ntBASIC2.75□□□□□ -1.97
Ccdc88bQ4QRL3 Gm15488-201ENSMUST00000121682 670 ntBASIC2.74□□□□□ -1.97
Ccdc88bQ4QRL3 Gm8739-201ENSMUST00000185962 181 ntTSL 5 BASIC2.74□□□□□ -1.97
Ccdc88bQ4QRL3 AC139186.1-201ENSMUST00000197610 94 ntBASIC2.74□□□□□ -1.97
Ccdc88bQ4QRL3 Mir6962-201ENSMUST00000199512 63 ntBASIC2.74□□□□□ -1.97
Ccdc88bQ4QRL3 Prl-203ENSMUST00000224228 888 ntAPPRIS ALT2 BASIC2.74□□□□□ -1.97
Ccdc88bQ4QRL3 Defb37-201ENSMUST00000066282 352 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
Ccdc88bQ4QRL3 Olfr862-202ENSMUST00000079660 2604 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
Ccdc88bQ4QRL3 Olfr868-202ENSMUST00000212999 4233 ntAPPRIS P1 TSL 3 BASIC2.74□□□□□ -1.97
Ccdc88bQ4QRL3 Vmn1r-ps144-201ENSMUST00000177291 939 ntBASIC2.73□□□□□ -1.97
Ccdc88bQ4QRL3 Gm44555-201ENSMUST00000209008 148 ntBASIC2.73□□□□□ -1.97
Ccdc88bQ4QRL3 Gm45742-201ENSMUST00000212400 433 ntBASIC2.73□□□□□ -1.97
Ccdc88bQ4QRL3 AC116656.1-201ENSMUST00000227040 755 ntBASIC2.73□□□□□ -1.97
Ccdc88bQ4QRL3 CT025525.2-201ENSMUST00000227743 423 ntBASIC2.73□□□□□ -1.97
Ccdc88bQ4QRL3 Tslp-201ENSMUST00000025237 1133 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
Ccdc88bQ4QRL3 Olfr1167-201ENSMUST00000099832 1100 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
Ccdc88bQ4QRL3 Cylc1-202ENSMUST00000210720 1969 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
Ccdc88bQ4QRL3 Olfr1208-202ENSMUST00000214121 2823 ntAPPRIS P1 TSL 3 BASIC2.72□□□□□ -1.97
Ccdc88bQ4QRL3 Gm43431-201ENSMUST00000198577 340 ntBASIC2.72□□□□□ -1.97
Ccdc88bQ4QRL3 Olfr501-ps1-201ENSMUST00000094105 946 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
Ccdc88bQ4QRL3 Olfr203-202ENSMUST00000215893 1521 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
Ccdc88bQ4QRL3 Olfr948-202ENSMUST00000216132 4164 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
Ccdc88bQ4QRL3 Trbv3-201ENSMUST00000103264 455 ntAPPRIS P1 BASIC2.71□□□□□ -1.97
Ccdc88bQ4QRL3 Gm22853-201ENSMUST00000174974 131 ntBASIC2.71□□□□□ -1.97
Ccdc88bQ4QRL3 AC124433.2-201ENSMUST00000223867 291 ntBASIC2.71□□□□□ -1.97
Ccdc88bQ4QRL3 Gm25755-201ENSMUST00000083396 107 ntBASIC2.71□□□□□ -1.97
Ccdc88bQ4QRL3 Gm43662-201ENSMUST00000198310 2271 ntBASIC2.71□□□□□ -1.98
Ccdc88bQ4QRL3 Gm15115-201ENSMUST00000121145 264 ntBASIC2.71□□□□□ -1.98
Ccdc88bQ4QRL3 Gm13194-201ENSMUST00000142299 311 ntBASIC2.71□□□□□ -1.98
Ccdc88bQ4QRL3 Gm15969-201ENSMUST00000151967 236 ntTSL 3 BASIC2.71□□□□□ -1.98
Ccdc88bQ4QRL3 Obox4-ps6-201ENSMUST00000176578 724 ntBASIC2.71□□□□□ -1.98
Ccdc88bQ4QRL3 Gm29658-201ENSMUST00000185404 230 ntBASIC2.71□□□□□ -1.98
Ccdc88bQ4QRL3 Gm42581-201ENSMUST00000201774 966 ntBASIC2.71□□□□□ -1.98
Ccdc88bQ4QRL3 Olfr851-201ENSMUST00000064582 939 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
Ccdc88bQ4QRL3 Gm12934-201ENSMUST00000119221 343 ntBASIC2.7□□□□□ -1.98
Ccdc88bQ4QRL3 Gm17065-201ENSMUST00000165245 239 ntBASIC2.7□□□□□ -1.98
Ccdc88bQ4QRL3 Gm6788-201ENSMUST00000166459 270 ntBASIC2.7□□□□□ -1.98
Ccdc88bQ4QRL3 Ear-ps3-201ENSMUST00000168308 445 ntBASIC2.7□□□□□ -1.98
Ccdc88bQ4QRL3 4921527H02Rik-202ENSMUST00000196005 947 ntBASIC2.7□□□□□ -1.98
Ccdc88bQ4QRL3 Gm36546-201ENSMUST00000206372 230 ntTSL 5 BASIC2.7□□□□□ -1.98
Ccdc88bQ4QRL3 Gm33501-202ENSMUST00000209983 706 ntTSL 5 BASIC2.7□□□□□ -1.98
Ccdc88bQ4QRL3 AC157017.1-201ENSMUST00000220148 364 ntBASIC2.7□□□□□ -1.98
Ccdc88bQ4QRL3 Fau-ps1-201ENSMUST00000119675 252 ntBASIC2.69□□□□□ -1.98
Ccdc88bQ4QRL3 Gm23329-201ENSMUST00000157415 108 ntBASIC2.69□□□□□ -1.98
Ccdc88bQ4QRL3 Gm5967-201ENSMUST00000172723 494 ntBASIC2.69□□□□□ -1.98
Ccdc88bQ4QRL3 Gtpbp4-ps1-201ENSMUST00000184732 249 ntBASIC2.69□□□□□ -1.98
Ccdc88bQ4QRL3 Gm22245-201ENSMUST00000082479 103 ntBASIC2.69□□□□□ -1.98
Ccdc88bQ4QRL3 Vmn1r10-202ENSMUST00000228270 2084 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
Ccdc88bQ4QRL3 Gm12697-201ENSMUST00000118008 667 ntBASIC2.68□□□□□ -1.98
Ccdc88bQ4QRL3 Gm13487-201ENSMUST00000122240 864 ntBASIC2.68□□□□□ -1.98
Ccdc88bQ4QRL3 Gm8224-201ENSMUST00000166178 497 ntBASIC2.68□□□□□ -1.98
Ccdc88bQ4QRL3 Gm28802-201ENSMUST00000188624 944 ntBASIC2.68□□□□□ -1.98
Ccdc88bQ4QRL3 Gm40040-202ENSMUST00000196337 305 ntTSL 3 BASIC2.68□□□□□ -1.98
Ccdc88bQ4QRL3 Igkv13-80-1-201ENSMUST00000197926 255 ntBASIC2.68□□□□□ -1.98
Ccdc88bQ4QRL3 Olfr1007-ps1-201ENSMUST00000217468 138 ntBASIC2.68□□□□□ -1.98
Ccdc88bQ4QRL3 AC134601.3-201ENSMUST00000221682 154 ntBASIC2.68□□□□□ -1.98
Ccdc88bQ4QRL3 Snord71-201ENSMUST00000104361 85 ntBASIC2.67□□□□□ -1.98
Ccdc88bQ4QRL3 Gm14694-201ENSMUST00000121856 282 ntBASIC2.67□□□□□ -1.98
Ccdc88bQ4QRL3 Rhox11-ps1-201ENSMUST00000121945 387 ntBASIC2.67□□□□□ -1.98
Ccdc88bQ4QRL3 Prl2c5-204ENSMUST00000151144 623 ntTSL 2 BASIC2.67□□□□□ -1.98
Ccdc88bQ4QRL3 AC151843.1-201ENSMUST00000215960 691 ntBASIC2.67□□□□□ -1.98
Ccdc88bQ4QRL3 CT030254.3-201ENSMUST00000225959 1231 ntBASIC2.67□□□□□ -1.98
Ccdc88bQ4QRL3 Pip-201ENSMUST00000075351 588 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
Ccdc88bQ4QRL3 Olfr805-203ENSMUST00000216794 3199 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 Igkv13-84-201ENSMUST00000103339 347 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 Gm11011-201ENSMUST00000109160 258 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 Igkv13-85-201ENSMUST00000114212 347 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 Gm11352-201ENSMUST00000119264 517 ntBASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 Rpl39-ps-201ENSMUST00000142604 355 ntBASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 Gm23760-201ENSMUST00000158350 116 ntBASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 Gm24572-201ENSMUST00000175505 88 ntBASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 Mir6950-201ENSMUST00000184438 73 ntBASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 Gm27952-201ENSMUST00000184748 105 ntBASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 Gm37676-201ENSMUST00000195496 507 ntBASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 Gm32877-201ENSMUST00000197419 709 ntTSL 5 BASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 AC160970.1-201ENSMUST00000219311 475 ntBASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 Gm10088-201ENSMUST00000074116 423 ntBASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 Spata45-201ENSMUST00000077889 432 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 Olfr1037-203ENSMUST00000216020 1359 ntAPPRIS P1 TSL 3 BASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 Gm3081-201ENSMUST00000193413 3025 ntBASIC2.66□□□□□ -1.98
Ccdc88bQ4QRL3 Gm25787-201ENSMUST00000104709 92 ntBASIC2.65□□□□□ -1.98
Ccdc88bQ4QRL3 Gm14923-201ENSMUST00000118270 155 ntBASIC2.65□□□□□ -1.98
Retrieved 100 of 76,532 protein–RNA pairs in 78.3 ms