Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm6240-201ENSMUST00000208014 473 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Olfr638-201ENSMUST00000209757 966 ntAPPRIS P2 BASIC3.57□□□□□ -1.84
ShhQ62226 Olfr810-203ENSMUST00000214878 4709 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
ShhQ62226 Olfr814-203ENSMUST00000216966 3819 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
ShhQ62226 AC154600.1-201ENSMUST00000226480 714 ntBASIC3.57□□□□□ -1.84
ShhQ62226 AC113031.5-201ENSMUST00000227116 606 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Gm25481-201ENSMUST00000083221 158 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Gm10553-201ENSMUST00000097669 372 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
ShhQ62226 Iigp1-201ENSMUST00000032473 3121 ntAPPRIS P1 TSL 3 BASIC3.57□□□□□ -1.84
ShhQ62226 Vmn2r19-201ENSMUST00000073948 2565 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
ShhQ62226 Olfr1484-204ENSMUST00000216014 3842 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
ShhQ62226 Gm21033-201ENSMUST00000208590 2608 ntBASIC3.56□□□□□ -1.84
ShhQ62226 Gm26396-201ENSMUST00000104093 132 ntBASIC3.56□□□□□ -1.84
ShhQ62226 Gm15994-201ENSMUST00000118029 402 ntBASIC3.56□□□□□ -1.84
ShhQ62226 Gm11784-201ENSMUST00000118568 474 ntBASIC3.56□□□□□ -1.84
ShhQ62226 Gm12787-201ENSMUST00000119234 396 ntBASIC3.56□□□□□ -1.84
ShhQ62226 Gm22136-201ENSMUST00000158751 268 ntBASIC3.56□□□□□ -1.84
ShhQ62226 Gm23024-201ENSMUST00000158770 292 ntBASIC3.56□□□□□ -1.84
ShhQ62226 Gm20476-201ENSMUST00000172644 492 ntTSL 2 BASIC3.56□□□□□ -1.84
ShhQ62226 Gm17919-201ENSMUST00000173344 312 ntBASIC3.56□□□□□ -1.84
ShhQ62226 Gm20681-201ENSMUST00000176061 503 ntTSL 2 BASIC3.56□□□□□ -1.84
ShhQ62226 Olfr1187-ps1-201ENSMUST00000177576 334 ntBASIC3.56□□□□□ -1.84
ShhQ62226 AV026068-203ENSMUST00000185946 668 ntTSL 3 BASIC3.56□□□□□ -1.84
ShhQ62226 Trav17-202ENSMUST00000186545 338 ntAPPRIS ALT2 BASIC3.56□□□□□ -1.84
ShhQ62226 Fabp9-203ENSMUST00000193487 486 ntTSL 3 BASIC3.56□□□□□ -1.84
ShhQ62226 Gm4644-201ENSMUST00000197587 400 ntBASIC3.56□□□□□ -1.84
ShhQ62226 Gm5322-201ENSMUST00000206142 699 ntBASIC3.56□□□□□ -1.84
ShhQ62226 AC159232.1-201ENSMUST00000222297 580 ntTSL 3 BASIC3.56□□□□□ -1.84
ShhQ62226 Gm30198-201ENSMUST00000222873 824 ntTSL 2 BASIC3.56□□□□□ -1.84
ShhQ62226 AC154368.1-201ENSMUST00000223465 205 ntTSL 5 BASIC3.56□□□□□ -1.84
ShhQ62226 AC091783.5-201ENSMUST00000224928 671 ntBASIC3.56□□□□□ -1.84
ShhQ62226 AC118639.1-204ENSMUST00000226401 694 ntBASIC3.56□□□□□ -1.84
ShhQ62226 AC112935.1-201ENSMUST00000227603 250 ntBASIC3.56□□□□□ -1.84
ShhQ62226 Lelp1-201ENSMUST00000029535 857 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
ShhQ62226 Gm25200-201ENSMUST00000083094 130 ntBASIC3.56□□□□□ -1.84
ShhQ62226 Gm25755-201ENSMUST00000083396 107 ntBASIC3.56□□□□□ -1.84
ShhQ62226 Vmn1r71-205ENSMUST00000227940 4725 ntAPPRIS P2 BASIC3.56□□□□□ -1.84
ShhQ62226 Olfr1058-202ENSMUST00000213998 1710 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
ShhQ62226 Zfp62-212ENSMUST00000180016 3964 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
ShhQ62226 9430025C20Rik-201ENSMUST00000068663 2115 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm26140-201ENSMUST00000103807 110 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm26387-201ENSMUST00000104238 132 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm14670-201ENSMUST00000117327 337 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm12156-201ENSMUST00000119188 554 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm12806-201ENSMUST00000119384 268 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm15377-201ENSMUST00000119594 246 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm12515-201ENSMUST00000120116 361 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm24419-201ENSMUST00000157875 332 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm23702-201ENSMUST00000158840 130 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Vmn1r-ps15-201ENSMUST00000177365 910 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm21726-201ENSMUST00000179654 392 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm22633-201ENSMUST00000179834 107 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Mir6917-201ENSMUST00000184111 61 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Mir6938-201ENSMUST00000184173 63 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm27490-201ENSMUST00000184754 128 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm29334-201ENSMUST00000190334 357 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm38050-201ENSMUST00000191904 238 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm37081-201ENSMUST00000192034 196 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm37343-201ENSMUST00000192542 111 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm8197-201ENSMUST00000192906 363 ntTSL 5 BASIC3.55□□□□□ -1.84
ShhQ62226 Gm17966-201ENSMUST00000193453 594 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm45080-201ENSMUST00000206648 283 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Olfr662-ps1-201ENSMUST00000210704 396 ntBASIC3.55□□□□□ -1.84
ShhQ62226 2500002B13Rik-202ENSMUST00000210752 298 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
ShhQ62226 Gm18252-201ENSMUST00000214814 527 ntTSL 5 BASIC3.55□□□□□ -1.84
ShhQ62226 AC125379.1-201ENSMUST00000221928 111 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Spink1-201ENSMUST00000025381 422 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
ShhQ62226 Ccl5-201ENSMUST00000035938 532 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
ShhQ62226 Efcab9-201ENSMUST00000054327 754 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
ShhQ62226 Gm26056-201ENSMUST00000083043 104 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm23297-201ENSMUST00000083184 127 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Trdn-208ENSMUST00000219982 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
ShhQ62226 Gm3636-202ENSMUST00000163850 1746 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
ShhQ62226 A830019L24Rik-201ENSMUST00000197226 1652 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
ShhQ62226 Svs2-201ENSMUST00000044953 1695 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
ShhQ62226 Foxp2-203ENSMUST00000115470 2692 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
ShhQ62226 AC122840.2-201ENSMUST00000221030 2659 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Gm4788-203ENSMUST00000111989 3187 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
ShhQ62226 Vmn1r89-203ENSMUST00000227176 4189 ntAPPRIS P2 BASIC3.55□□□□□ -1.84
ShhQ62226 Gm17969-201ENSMUST00000185706 2557 ntBASIC3.55□□□□□ -1.84
ShhQ62226 Olfr598-202ENSMUST00000214765 2026 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
ShhQ62226 Gm2093-201ENSMUST00000180518 3526 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
ShhQ62226 Olfr301-201ENSMUST00000174362 1937 ntAPPRIS P1 TSL 3 BASIC3.54□□□□□ -1.84
ShhQ62226 Vmn2r101-201ENSMUST00000171914 2574 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
ShhQ62226 Gm23063-201ENSMUST00000102350 93 ntBASIC3.54□□□□□ -1.84
ShhQ62226 Gm22656-201ENSMUST00000104199 171 ntBASIC3.54□□□□□ -1.84
ShhQ62226 Atp5j-203ENSMUST00000114193 680 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
ShhQ62226 Gm13314-201ENSMUST00000118742 335 ntBASIC3.54□□□□□ -1.84
ShhQ62226 Gm12137-201ENSMUST00000119565 346 ntBASIC3.54□□□□□ -1.84
ShhQ62226 Gm11982-201ENSMUST00000121480 314 ntBASIC3.54□□□□□ -1.84
ShhQ62226 Gm26476-201ENSMUST00000122618 313 ntBASIC3.54□□□□□ -1.84
ShhQ62226 Gm14254-201ENSMUST00000136371 296 ntTSL 5 BASIC3.54□□□□□ -1.84
ShhQ62226 Gm21814-201ENSMUST00000144085 291 ntTSL 5 BASIC3.54□□□□□ -1.84
ShhQ62226 Gm23198-201ENSMUST00000158811 91 ntBASIC3.54□□□□□ -1.84
ShhQ62226 Vmn1r-ps86-201ENSMUST00000174052 547 ntBASIC3.54□□□□□ -1.84
ShhQ62226 Gm26779-201ENSMUST00000181101 551 ntTSL 2 BASIC3.54□□□□□ -1.84
ShhQ62226 Gm21673-201ENSMUST00000186640 436 ntBASIC3.54□□□□□ -1.84
ShhQ62226 Mrgprb1-202ENSMUST00000188095 472 ntTSL 3 BASIC3.54□□□□□ -1.84
ShhQ62226 Gm21135-201ENSMUST00000189023 436 ntBASIC3.54□□□□□ -1.84
ShhQ62226 Gm38329-201ENSMUST00000193473 427 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 76,532 protein–RNA pairs in 85.5 ms