Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm25341-201ENSMUST00000157461 268 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm23084-201ENSMUST00000157850 114 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm16303-201ENSMUST00000161498 390 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm7568-203ENSMUST00000161626 415 ntTSL 3 BASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm15446-203ENSMUST00000170826 192 ntTSL 5 BASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm3370-201ENSMUST00000171785 500 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm25314-201ENSMUST00000178810 79 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 2310001H17Rik-201ENSMUST00000180379 521 ntTSL 2 BASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm26936-201ENSMUST00000182424 382 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm27490-201ENSMUST00000184754 128 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Mrgprb12-ps-201ENSMUST00000186150 949 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm28399-201ENSMUST00000186221 318 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm28572-201ENSMUST00000187444 318 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 2010005H15Rik-203ENSMUST00000187742 466 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm32447-201ENSMUST00000194265 697 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Nras-ps2-201ENSMUST00000195269 178 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm45031-201ENSMUST00000206800 288 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm45101-201ENSMUST00000208327 232 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm45402-201ENSMUST00000211796 223 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm4036-201ENSMUST00000220842 626 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 AL645546.1-201ENSMUST00000225001 189 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 AC187103.4-202ENSMUST00000225091 230 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 AC102575.1-201ENSMUST00000225348 547 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 CT009711.3-201ENSMUST00000225882 250 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 AC138718.1-201ENSMUST00000225947 1009 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 AC154276.2-201ENSMUST00000227707 309 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm23515-201ENSMUST00000082829 107 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Mir21a-201ENSMUST00000083521 92 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Rpl32-ps-201ENSMUST00000091052 506 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Csn1s1-205ENSMUST00000197631 1359 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Olfr1249-202ENSMUST00000216124 3047 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm20172-201ENSMUST00000193138 1551 ntBASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Olfr711-202ENSMUST00000207200 2966 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gpr34-202ENSMUST00000096492 1898 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Olfr1028-201ENSMUST00000080698 3474 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Gm17067-201ENSMUST00000166837 3673 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
Ubfd1Q78JW9 Olfr747-204ENSMUST00000213238 1416 ntAPPRIS P1 TSL 3 BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Zc3h14-201ENSMUST00000021399 1430 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Vmn1r45-208ENSMUST00000228662 3309 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm17969-201ENSMUST00000185706 2557 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Olfr1016-202ENSMUST00000216425 2698 ntAPPRIS P1 TSL 3 BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Chst9-201ENSMUST00000053017 1620 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Olfm3-201ENSMUST00000051309 3928 ntAPPRIS P4 TSL 1 (best) BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Btbd35f23-201ENSMUST00000189190 1943 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm4788-202ENSMUST00000111986 2935 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Vmn2r32-201ENSMUST00000094866 3513 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 A230057D06Rik-202ENSMUST00000207061 3717 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Tcrg-V5-201ENSMUST00000103556 293 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Olfr160-201ENSMUST00000104875 930 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm13331-201ENSMUST00000117500 448 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm15180-201ENSMUST00000117745 492 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm14624-201ENSMUST00000117746 192 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm11386-201ENSMUST00000117761 347 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Spink2-202ENSMUST00000120429 594 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm15014-201ENSMUST00000120742 258 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 AA413626-201ENSMUST00000121125 494 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Smt3h2-ps4-201ENSMUST00000121569 288 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm11229-201ENSMUST00000121993 437 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm25105-201ENSMUST00000122477 130 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm24724-201ENSMUST00000158230 107 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm24666-201ENSMUST00000158937 167 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm21638-201ENSMUST00000179473 836 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Obox4-ps3-201ENSMUST00000183474 520 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Mir6938-201ENSMUST00000184173 63 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Mir6385-201ENSMUST00000184295 105 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm29134-201ENSMUST00000186579 126 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm29591-201ENSMUST00000188215 357 ntTSL 5 BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm28217-201ENSMUST00000188613 648 ntTSL 5 BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm20937-202ENSMUST00000189084 811 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm28843-201ENSMUST00000189198 678 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm20736-203ENSMUST00000190282 836 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm29192-201ENSMUST00000190942 377 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm29546-201ENSMUST00000191171 678 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Topbp1-ps2-201ENSMUST00000191289 189 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm36866-201ENSMUST00000193343 657 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm36047-201ENSMUST00000193659 657 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm38041-201ENSMUST00000194445 661 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm20857-201ENSMUST00000194766 657 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm20858-201ENSMUST00000195459 657 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Igkv2-113-201ENSMUST00000196138 362 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm43236-201ENSMUST00000197414 313 ntTSL 5 BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm43814-201ENSMUST00000197851 413 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Rpl36a-ps2-201ENSMUST00000197973 321 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm44726-201ENSMUST00000203427 217 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm10445-201ENSMUST00000203521 762 ntTSL 2 BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Olfr546-ps1-201ENSMUST00000210328 326 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm45455-202ENSMUST00000211156 630 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Olfr936-202ENSMUST00000216912 937 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 AC166358.10-201ENSMUST00000220556 144 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 AC124581.4-201ENSMUST00000225874 463 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Ly6a-201ENSMUST00000023248 819 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Ssxa1-201ENSMUST00000072593 433 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Olfr295-201ENSMUST00000078447 930 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Gm22974-201ENSMUST00000083301 103 ntBASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Olfr1012-202ENSMUST00000214255 3115 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Olfr186-202ENSMUST00000206463 2208 ntAPPRIS P1 TSL 3 BASIC3.7□□□□□ -1.82
Ubfd1Q78JW9 Vmn1r51-207ENSMUST00000227766 4218 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
Ubfd1Q78JW9 Olfr1079-203ENSMUST00000216480 2071 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
Ubfd1Q78JW9 Gm3616-201ENSMUST00000174430 2514 ntBASIC3.69□□□□□ -1.82
Ubfd1Q78JW9 Vmn1r51-205ENSMUST00000227109 4214 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
Retrieved 100 of 76,532 protein–RNA pairs in 75.8 ms