Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Prl2c5-201ENSMUST00000021778 844 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
ShhQ62226 AC153361.2-201ENSMUST00000218188 481 ntTSL 5 BASIC3.59□□□□□ -1.83
ShhQ62226 Gm3829-201ENSMUST00000222362 619 ntBASIC3.59□□□□□ -1.83
ShhQ62226 AC104832.1-201ENSMUST00000222938 550 ntBASIC3.59□□□□□ -1.83
ShhQ62226 AC154603.1-201ENSMUST00000224355 313 ntBASIC3.59□□□□□ -1.83
ShhQ62226 AC115289.1-201ENSMUST00000224915 522 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Vmn1r31-204ENSMUST00000226390 912 ntAPPRIS P2 BASIC3.59□□□□□ -1.83
ShhQ62226 Ear2-201ENSMUST00000074839 719 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
ShhQ62226 Gm23515-201ENSMUST00000082829 107 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Gm23645-201ENSMUST00000083228 108 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Gm24611-201ENSMUST00000083272 107 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Gm23970-201ENSMUST00000083319 107 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Mir370-201ENSMUST00000083499 79 ntBASIC3.59□□□□□ -1.83
ShhQ62226 4930415L06Rik-201ENSMUST00000088146 2617 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
ShhQ62226 Pde1a-205ENSMUST00000102654 4122 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
ShhQ62226 Sult2a8-203ENSMUST00000168252 2097 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
ShhQ62226 Olfr1051-202ENSMUST00000216432 2807 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
ShhQ62226 Olfr1051-203ENSMUST00000217245 2821 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
ShhQ62226 Olfr1051-204ENSMUST00000217294 2840 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
ShhQ62226 Cdc27-203ENSMUST00000106962 3160 ntTSL 5 BASIC3.59□□□□□ -1.84
ShhQ62226 Vmn2r-ps47-201ENSMUST00000174515 2557 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Btbd35f23-201ENSMUST00000189190 1943 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
ShhQ62226 Trbv5-201ENSMUST00000103266 368 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
ShhQ62226 2610042L04Rik-201ENSMUST00000112778 599 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
ShhQ62226 Gm12149-201ENSMUST00000117511 654 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm14890-201ENSMUST00000117660 676 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm14594-201ENSMUST00000118052 537 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm14590-201ENSMUST00000118934 537 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm8217-201ENSMUST00000119136 465 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm15037-201ENSMUST00000120358 259 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm15671-201ENSMUST00000124160 576 ntTSL 5 BASIC3.58□□□□□ -1.84
ShhQ62226 Gm14161-201ENSMUST00000137020 339 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
ShhQ62226 Gm26320-201ENSMUST00000157742 306 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm16311-201ENSMUST00000161939 702 ntTSL 3 BASIC3.58□□□□□ -1.84
ShhQ62226 Gm24810-201ENSMUST00000175317 70 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm25361-201ENSMUST00000179358 76 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm14596-201ENSMUST00000180268 537 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm24518-201ENSMUST00000180275 94 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm14595-201ENSMUST00000180335 537 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm27477-201ENSMUST00000184649 143 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm19641-201ENSMUST00000188432 417 ntBASIC3.58□□□□□ -1.84
ShhQ62226 n-TSaga9-201ENSMUST00000197675 107 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Mir7682-201ENSMUST00000198467 58 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm42526-201ENSMUST00000198956 393 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm43083-201ENSMUST00000199594 476 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm44600-201ENSMUST00000208540 111 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm45387-201ENSMUST00000209792 632 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm45553-201ENSMUST00000209929 507 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm45420-201ENSMUST00000211243 425 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm45402-201ENSMUST00000211796 223 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm19219-201ENSMUST00000215863 724 ntBASIC3.58□□□□□ -1.84
ShhQ62226 AC132465.3-201ENSMUST00000219326 195 ntBASIC3.58□□□□□ -1.84
ShhQ62226 AC155929.1-201ENSMUST00000220217 1276 ntBASIC3.58□□□□□ -1.84
ShhQ62226 AC166358.10-201ENSMUST00000220556 144 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm34408-201ENSMUST00000222104 655 ntTSL 5 BASIC3.58□□□□□ -1.84
ShhQ62226 AC098719.1-201ENSMUST00000228920 371 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Gm24037-201ENSMUST00000082871 180 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Defb33-201ENSMUST00000098908 424 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
ShhQ62226 Olfr992-201ENSMUST00000099927 930 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
ShhQ62226 Gm4788-202ENSMUST00000111986 2935 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
ShhQ62226 Olfr711-202ENSMUST00000207200 2966 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
ShhQ62226 Olfr706-202ENSMUST00000213918 4828 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
ShhQ62226 A430106G13Rik-201ENSMUST00000182158 3388 ntBASIC3.58□□□□□ -1.84
ShhQ62226 Cdh7-201ENSMUST00000027542 3390 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
ShhQ62226 Olfr1369-ps1-203ENSMUST00000213922 3930 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
ShhQ62226 Mcmdc2-203ENSMUST00000125294 2003 ntTSL 5 BASIC3.58□□□□□ -1.84
ShhQ62226 Olfr1093-203ENSMUST00000219561 2124 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
ShhQ62226 4930467E23Rik-201ENSMUST00000098909 2514 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
ShhQ62226 Gm37848-201ENSMUST00000195288 3103 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Olfr392-201ENSMUST00000118463 3643 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
ShhQ62226 Xiap-201ENSMUST00000026978 6834 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
ShhQ62226 Trav12d-2-201ENSMUST00000103593 341 ntAPPRIS ALT2 BASIC3.57□□□□□ -1.84
ShhQ62226 Trav12n-2-201ENSMUST00000103619 341 ntAPPRIS ALT2 BASIC3.57□□□□□ -1.84
ShhQ62226 Gm6760-201ENSMUST00000114682 604 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
ShhQ62226 Gm13664-201ENSMUST00000117304 345 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Gm12386-201ENSMUST00000117380 688 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Gm15379-201ENSMUST00000121224 648 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Gm11403-201ENSMUST00000122195 369 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Clec5a-203ENSMUST00000129948 858 ntAPPRIS P4 TSL 1 (best) BASIC3.57□□□□□ -1.84
ShhQ62226 Gm13943-201ENSMUST00000144043 343 ntTSL 5 BASIC3.57□□□□□ -1.84
ShhQ62226 Gm15969-201ENSMUST00000151967 236 ntTSL 3 BASIC3.57□□□□□ -1.84
ShhQ62226 Gm22380-201ENSMUST00000157479 95 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Gm24008-201ENSMUST00000157733 138 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Ubl5-209ENSMUST00000161882 489 ntTSL 3 BASIC3.57□□□□□ -1.84
ShhQ62226 Gm20468-201ENSMUST00000172664 452 ntTSL 3 BASIC3.57□□□□□ -1.84
ShhQ62226 Obox1-203ENSMUST00000172881 821 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
ShhQ62226 Obox4-ps35-201ENSMUST00000173825 680 ntTSL 3 BASIC3.57□□□□□ -1.84
ShhQ62226 Gm20794-201ENSMUST00000177626 628 ntBASIC3.57□□□□□ -1.84
ShhQ62226 H2al1k-201ENSMUST00000178196 510 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
ShhQ62226 Gm24713-201ENSMUST00000178850 107 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Gm25448-201ENSMUST00000180065 107 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Gm27392-201ENSMUST00000185041 101 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Gm28141-201ENSMUST00000186676 342 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Snhg14-207ENSMUST00000188162 770 ntTSL 5 BASIC3.57□□□□□ -1.84
ShhQ62226 Gm6651-201ENSMUST00000189471 271 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Gm37387-201ENSMUST00000192201 1806 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Gm37054-201ENSMUST00000193481 543 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Gm32447-201ENSMUST00000194265 697 ntBASIC3.57□□□□□ -1.84
ShhQ62226 Gm29926-201ENSMUST00000201443 660 ntTSL 3 BASIC3.57□□□□□ -1.84
ShhQ62226 Gm44864-201ENSMUST00000207292 505 ntTSL 2 BASIC3.57□□□□□ -1.84
Retrieved 100 of 76,532 protein–RNA pairs in 89 ms