Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Mir7222-201ENSMUST00000183740 75 ntBASIC5.44□□□□□ -1.54
Rnf40Q3U319 Mir6973b-201ENSMUST00000184185 80 ntBASIC5.44□□□□□ -1.54
Rnf40Q3U319 Gm28148-201ENSMUST00000186924 697 ntBASIC5.44□□□□□ -1.54
Rnf40Q3U319 Ccna2-205ENSMUST00000196316 2001 ntTSL 5 BASIC5.44□□□□□ -1.54
Rnf40Q3U319 Gm2602-201ENSMUST00000202112 571 ntBASIC5.44□□□□□ -1.54
Rnf40Q3U319 4930431P19Rik-201ENSMUST00000207570 451 ntBASIC5.44□□□□□ -1.54
Rnf40Q3U319 Gm44563-201ENSMUST00000207958 178 ntBASIC5.44□□□□□ -1.54
Rnf40Q3U319 Zfp980-202ENSMUST00000180014 1938 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
Rnf40Q3U319 AC152159.1-201ENSMUST00000226719 2769 ntBASIC5.44□□□□□ -1.54
Rnf40Q3U319 Rnf213-202ENSMUST00000131035 16716 ntAPPRIS P5 TSL 5 BASIC5.43□□□□□ -1.54
Rnf40Q3U319 Olfr124-202ENSMUST00000215168 4497 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
Rnf40Q3U319 AC165106.3-201ENSMUST00000228191 3843 ntBASIC5.43□□□□□ -1.54
Rnf40Q3U319 Vmn1r81-204ENSMUST00000228482 13495 ntAPPRIS ALT2 BASIC5.43□□□□□ -1.54
Rnf40Q3U319 Dleu2-207ENSMUST00000182756 3530 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
Rnf40Q3U319 Zfp799-201ENSMUST00000179695 5833 ntTSL 3 BASIC5.43□□□□□ -1.54
Rnf40Q3U319 Gm44439-201ENSMUST00000203379 3592 ntBASIC5.43□□□□□ -1.54
Rnf40Q3U319 Vmn1r200-204ENSMUST00000227326 5449 ntAPPRIS ALT2 BASIC5.43□□□□□ -1.54
Rnf40Q3U319 Gm23746-201ENSMUST00000104229 125 ntBASIC5.43□□□□□ -1.54
Rnf40Q3U319 Gm13114-201ENSMUST00000117605 106 ntBASIC5.43□□□□□ -1.54
Rnf40Q3U319 Gm15012-201ENSMUST00000119176 106 ntBASIC5.43□□□□□ -1.54
Rnf40Q3U319 Gm12438-201ENSMUST00000122034 336 ntBASIC5.43□□□□□ -1.54
Rnf40Q3U319 Gm14697-201ENSMUST00000147144 648 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
Rnf40Q3U319 Gm16060-201ENSMUST00000153140 478 ntBASIC5.43□□□□□ -1.54
Rnf40Q3U319 Gm16230-201ENSMUST00000155550 521 ntTSL 3 BASIC5.43□□□□□ -1.54
Rnf40Q3U319 Gm25013-201ENSMUST00000158402 128 ntBASIC5.43□□□□□ -1.54
Rnf40Q3U319 Gm16114-201ENSMUST00000161930 300 ntBASIC5.43□□□□□ -1.54
Rnf40Q3U319 Gm44261-201ENSMUST00000203337 209 ntBASIC5.43□□□□□ -1.54
Rnf40Q3U319 AC124445.1-201ENSMUST00000218613 452 ntBASIC5.43□□□□□ -1.54
Rnf40Q3U319 Olfr630-201ENSMUST00000106880 2198 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
Rnf40Q3U319 Olfr1252-203ENSMUST00000216203 3243 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
Rnf40Q3U319 Gm37479-201ENSMUST00000194169 3841 ntBASIC5.43□□□□□ -1.54
Rnf40Q3U319 Vmn1r20-202ENSMUST00000227909 3709 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
Rnf40Q3U319 C130073E24Rik-202ENSMUST00000211313 14112 ntTSL 5 BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Ccdc66-202ENSMUST00000223689 4262 ntAPPRIS P2 BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Clvs1-202ENSMUST00000108348 3526 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
Rnf40Q3U319 R3hdm1-201ENSMUST00000036288 4795 ntAPPRIS P2 TSL 5 BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Igkv14-100-201ENSMUST00000103325 350 ntAPPRIS ALT2 BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Traj43-201ENSMUST00000103699 57 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Gm25377-201ENSMUST00000104334 129 ntBASIC5.42□□□□□ -1.54
Rnf40Q3U319 Vmn1r124-201ENSMUST00000105200 924 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
Rnf40Q3U319 S100a5-202ENSMUST00000107329 431 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Gm14560-201ENSMUST00000118672 375 ntBASIC5.42□□□□□ -1.54
Rnf40Q3U319 Gm13873-201ENSMUST00000119208 427 ntBASIC5.42□□□□□ -1.54
Rnf40Q3U319 Gm14069-201ENSMUST00000120815 229 ntBASIC5.42□□□□□ -1.54
Rnf40Q3U319 Gmfg-ps-201ENSMUST00000121071 427 ntBASIC5.42□□□□□ -1.54
Rnf40Q3U319 Gm6762-201ENSMUST00000121769 289 ntBASIC5.42□□□□□ -1.54
Rnf40Q3U319 Vmn1r103-201ENSMUST00000163461 918 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Vmn1r151-201ENSMUST00000166079 918 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Gm43746-201ENSMUST00000200028 317 ntBASIC5.42□□□□□ -1.54
Rnf40Q3U319 Gm44594-201ENSMUST00000208982 407 ntBASIC5.42□□□□□ -1.54
Rnf40Q3U319 CT030170.6-201ENSMUST00000221149 550 ntTSL 5 BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Rps4x-201ENSMUST00000033683 975 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Olfr1336-201ENSMUST00000056120 945 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Gm29536-201ENSMUST00000189296 3283 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Olfr782-202ENSMUST00000213970 1944 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Aadacl3-201ENSMUST00000105749 3153 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Scn7a-201ENSMUST00000042792 7338 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Olfr1228-202ENSMUST00000215447 3223 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Zfp984-202ENSMUST00000122309 2405 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
Rnf40Q3U319 Gm13961-201ENSMUST00000119282 4772 ntBASIC5.42□□□□□ -1.54
Rnf40Q3U319 Olfr47-202ENSMUST00000215569 1603 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
Rnf40Q3U319 Gm15023-201ENSMUST00000113183 3698 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
Rnf40Q3U319 AV320801-201ENSMUST00000068340 3698 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
Rnf40Q3U319 Gm43188-201ENSMUST00000200180 2160 ntBASIC5.41□□□□□ -1.54
Rnf40Q3U319 Trac-201ENSMUST00000103740 413 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
Rnf40Q3U319 Gm24839-201ENSMUST00000122602 107 ntBASIC5.41□□□□□ -1.54
Rnf40Q3U319 Gm23743-201ENSMUST00000157389 274 ntBASIC5.41□□□□□ -1.54
Rnf40Q3U319 Gm22943-201ENSMUST00000158564 76 ntBASIC5.41□□□□□ -1.54
Rnf40Q3U319 Kcne1-202ENSMUST00000166707 601 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
Rnf40Q3U319 Gm26983-201ENSMUST00000182051 388 ntBASIC5.41□□□□□ -1.54
Rnf40Q3U319 Gm29429-201ENSMUST00000187071 121 ntBASIC5.41□□□□□ -1.54
Rnf40Q3U319 2610044O15Rik8-203ENSMUST00000188757 413 ntTSL 2 BASIC5.41□□□□□ -1.54
Rnf40Q3U319 1810006J02Rik-202ENSMUST00000191060 523 ntTSL 2 BASIC5.41□□□□□ -1.54
Rnf40Q3U319 Gm38180-201ENSMUST00000192381 395 ntTSL 5 BASIC5.41□□□□□ -1.54
Rnf40Q3U319 Gm8820-201ENSMUST00000204077 571 ntBASIC5.41□□□□□ -1.54
Rnf40Q3U319 Gm38832-201ENSMUST00000205674 400 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
Rnf40Q3U319 Gm8942-201ENSMUST00000217892 400 ntBASIC5.41□□□□□ -1.54
Rnf40Q3U319 Elk3-205ENSMUST00000223340 750 ntTSL 5 BASIC5.41□□□□□ -1.54
Rnf40Q3U319 Gm5830-201ENSMUST00000049117 443 ntBASIC5.41□□□□□ -1.54
Rnf40Q3U319 Olfr869-201ENSMUST00000213024 1783 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
Rnf40Q3U319 Gm37205-201ENSMUST00000194820 2736 ntBASIC5.41□□□□□ -1.54
Rnf40Q3U319 Gab3-203ENSMUST00000114109 2093 ntTSL 2 BASIC5.41□□□□□ -1.54
Rnf40Q3U319 Gm39043-201ENSMUST00000207602 2081 ntTSL 5 BASIC5.41□□□□□ -1.54
Rnf40Q3U319 Vmn2r23-201ENSMUST00000172391 2602 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
Rnf40Q3U319 AC158805.1-201ENSMUST00000218197 2631 ntBASIC5.41□□□□□ -1.54
Rnf40Q3U319 Gm4746-201ENSMUST00000120395 2406 ntBASIC5.4□□□□□ -1.54
Rnf40Q3U319 Fat1-206ENSMUST00000215588 13938 ntTSL 5 BASIC5.4□□□□□ -1.54
Rnf40Q3U319 Gm26514-201ENSMUST00000181087 4231 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
Rnf40Q3U319 Gm21655-202ENSMUST00000199295 2975 ntTSL 5 BASIC5.4□□□□□ -1.54
Rnf40Q3U319 Gm21680-201ENSMUST00000200447 2975 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
Rnf40Q3U319 Zfp738-203ENSMUST00000137496 13215 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
Rnf40Q3U319 Inpp4b-203ENSMUST00000109852 4095 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
Rnf40Q3U319 Brip1-201ENSMUST00000044423 6931 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
Rnf40Q3U319 Gm44438-201ENSMUST00000204388 3236 ntBASIC5.4□□□□□ -1.54
Rnf40Q3U319 Igkv9-124-201ENSMUST00000103312 287 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
Rnf40Q3U319 Trav7-2-201ENSMUST00000103636 336 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
Rnf40Q3U319 n-R5s16-201ENSMUST00000104555 119 ntBASIC5.4□□□□□ -1.54
Rnf40Q3U319 Snora35-201ENSMUST00000104579 128 ntBASIC5.4□□□□□ -1.54
Rnf40Q3U319 Gm7189-201ENSMUST00000119811 429 ntBASIC5.4□□□□□ -1.54
Rnf40Q3U319 Gm12304-201ENSMUST00000120312 385 ntBASIC5.4□□□□□ -1.54
Retrieved 100 of 76,532 protein–RNA pairs in 91.6 ms