Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm24951-201ENSMUST00000102182 109 ntBASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Trav6-7-dv9-201ENSMUST00000103638 379 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm10972-201ENSMUST00000107276 81 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm14558-201ENSMUST00000117458 381 ntBASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm14681-201ENSMUST00000118047 411 ntBASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm23124-201ENSMUST00000157650 107 ntBASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm26187-201ENSMUST00000157693 101 ntBASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm17183-201ENSMUST00000171170 493 ntBASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm20777-201ENSMUST00000177818 699 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm21874-201ENSMUST00000178374 699 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm4076-201ENSMUST00000179230 965 ntBASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm20873-201ENSMUST00000179410 699 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm20737-201ENSMUST00000179665 699 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm21310-201ENSMUST00000180130 699 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm28843-201ENSMUST00000189198 678 ntBASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm29365-201ENSMUST00000189461 699 ntBASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm29546-201ENSMUST00000191171 678 ntBASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm37565-201ENSMUST00000192277 491 ntTSL 3 BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm37650-201ENSMUST00000193570 248 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm43236-201ENSMUST00000197414 313 ntTSL 5 BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Olfr1482-ps1-201ENSMUST00000207181 178 ntBASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 AC159885.1-201ENSMUST00000222221 199 ntBASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm9370-201ENSMUST00000222787 609 ntBASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Hamp-201ENSMUST00000062620 410 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Olfr295-201ENSMUST00000078447 930 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Olfr895-201ENSMUST00000093864 951 ntBASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm44283-201ENSMUST00000204461 3950 ntBASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Gm44689-201ENSMUST00000208786 1372 ntTSL 5 BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Vmn1r14-204ENSMUST00000227768 7005 ntAPPRIS P2 BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Olfr711-202ENSMUST00000207200 2966 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Zfp990-201ENSMUST00000105741 3044 ntAPPRIS P1 TSL 3 BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Olfr205-202ENSMUST00000213910 1650 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 Mga-203ENSMUST00000110773 13577 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
Ddb1Q3U1J4 9330158H04Rik-201ENSMUST00000101535 3174 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm43829-201ENSMUST00000196191 3802 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Has2-201ENSMUST00000050544 4237 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Mir19b-1-201ENSMUST00000102301 87 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm24068-201ENSMUST00000104513 132 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Rps6ka3-204ENSMUST00000112493 3671 ntTSL 5 BASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm12386-201ENSMUST00000117380 688 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm12025-201ENSMUST00000117768 144 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm13082-201ENSMUST00000118877 561 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm12053-201ENSMUST00000119022 252 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm9078-201ENSMUST00000119126 617 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm6762-201ENSMUST00000121769 289 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm15961-201ENSMUST00000156090 266 ntTSL 3 BASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm24059-201ENSMUST00000157493 312 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm23702-201ENSMUST00000158840 130 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm3616-201ENSMUST00000174430 2514 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Mir5098-201ENSMUST00000175320 82 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Clec5a-204ENSMUST00000177178 665 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm21788-201ENSMUST00000177878 543 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 RMST_1.1-201ENSMUST00000182623 407 ntTSL 2 BASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm27226-201ENSMUST00000184676 511 ntTSL 2 BASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Scgb2b16-ps-201ENSMUST00000188720 333 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm29097-201ENSMUST00000190273 422 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm28098-201ENSMUST00000191361 699 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm38010-201ENSMUST00000192592 2784 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Cyp3a63-ps-201ENSMUST00000196626 1170 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm18971-201ENSMUST00000197240 374 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm35191-201ENSMUST00000200925 2475 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm44726-201ENSMUST00000203427 217 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm34549-201ENSMUST00000207057 1611 ntTSL 5 BASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm45614-201ENSMUST00000209994 721 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Gm20039-201ENSMUST00000210329 394 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 AC132384.9-201ENSMUST00000218085 277 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 AC116589.3-202ENSMUST00000221770 649 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 AC116589.6-201ENSMUST00000222252 649 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 AC167192.2-201ENSMUST00000224794 198 ntBASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 Vmn1r90-207ENSMUST00000227692 7101 ntAPPRIS P2 BASIC4.59□□□□□ -1.67
Ddb1Q3U1J4 D930036K23Rik-201ENSMUST00000191894 3964 ntBASIC4.59□□□□□ -1.68
Ddb1Q3U1J4 Prlr-205ENSMUST00000128921 3836 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.68
Ddb1Q3U1J4 4930562D21Rik-201ENSMUST00000123894 1750 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Olfr855-202ENSMUST00000215587 1797 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Neat1-201ENSMUST00000173672 20771 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Hdx-202ENSMUST00000113422 9534 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Crisp1-201ENSMUST00000026498 1416 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Gm11639-203ENSMUST00000212287 17665 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Gm5762-201ENSMUST00000119204 258 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 4930401O12Rik-201ENSMUST00000153175 841 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Gm23435-201ENSMUST00000157183 156 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Gm24976-201ENSMUST00000158972 135 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Gm23775-201ENSMUST00000158991 249 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Mir3964-201ENSMUST00000174898 74 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 2610044O15Rik8-203ENSMUST00000188757 413 ntTSL 2 BASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Gm28090-201ENSMUST00000189458 664 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Gm37889-201ENSMUST00000194174 251 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Trbv24-201ENSMUST00000194614 347 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Gm37404-201ENSMUST00000195726 359 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Gm43238-201ENSMUST00000196463 359 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Mgst1-208ENSMUST00000204628 471 ntTSL 3 BASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Gm44594-201ENSMUST00000208982 407 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Gm45427-201ENSMUST00000209572 1253 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 AC100590.2-201ENSMUST00000219028 215 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Gm18696-201ENSMUST00000220103 274 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Gm18441-201ENSMUST00000223539 617 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 AC124729.1-201ENSMUST00000225327 976 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 AC120553.1-201ENSMUST00000227313 260 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Gm9845-201ENSMUST00000056409 598 ntBASIC4.58□□□□□ -1.68
Ddb1Q3U1J4 Olfr1013-201ENSMUST00000065626 918 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
Retrieved 100 of 76,532 protein–RNA pairs in 84.5 ms