Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm24273-201ENSMUST00000102332 164 ntBASIC3.61□□□□□ -1.83
ShhQ62226 Ighv3-3-201ENSMUST00000103476 296 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
ShhQ62226 Gm24318-201ENSMUST00000104490 131 ntBASIC3.61□□□□□ -1.83
ShhQ62226 Zfp931-202ENSMUST00000108924 962 ntAPPRIS P1 TSL 3 BASIC3.61□□□□□ -1.83
ShhQ62226 Gm14406-201ENSMUST00000108943 531 ntTSL 2 BASIC3.61□□□□□ -1.83
ShhQ62226 Gm11221-201ENSMUST00000117230 597 ntBASIC3.61□□□□□ -1.83
ShhQ62226 Gm15399-201ENSMUST00000118055 724 ntBASIC3.61□□□□□ -1.83
ShhQ62226 Rpl36a-ps3-201ENSMUST00000120093 321 ntBASIC3.61□□□□□ -1.83
ShhQ62226 Gm7308-201ENSMUST00000121087 447 ntBASIC3.61□□□□□ -1.83
ShhQ62226 AI847159-201ENSMUST00000137728 305 ntTSL 2 BASIC3.61□□□□□ -1.83
ShhQ62226 Gm14618-201ENSMUST00000149377 740 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
ShhQ62226 Gm26148-201ENSMUST00000157430 68 ntBASIC3.61□□□□□ -1.83
ShhQ62226 Gm7241-201ENSMUST00000159853 357 ntBASIC3.61□□□□□ -1.83
ShhQ62226 BC028528-205ENSMUST00000171519 447 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
ShhQ62226 Rpl31-ps21-201ENSMUST00000181182 374 ntBASIC3.61□□□□□ -1.83
ShhQ62226 Mir6951-201ENSMUST00000183910 75 ntBASIC3.61□□□□□ -1.83
ShhQ62226 Mrgprb12-ps-201ENSMUST00000186150 949 ntBASIC3.61□□□□□ -1.83
ShhQ62226 Gm5368-201ENSMUST00000189012 589 ntBASIC3.61□□□□□ -1.83
ShhQ62226 Gm7182-201ENSMUST00000193351 732 ntBASIC3.61□□□□□ -1.83
ShhQ62226 Gm44142-201ENSMUST00000203358 311 ntBASIC3.61□□□□□ -1.83
ShhQ62226 Gm44274-201ENSMUST00000203417 256 ntBASIC3.61□□□□□ -1.83
ShhQ62226 AC153977.1-201ENSMUST00000219416 506 ntTSL 5 BASIC3.61□□□□□ -1.83
ShhQ62226 Vmn1r230-201ENSMUST00000053974 951 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
ShhQ62226 Olfr235-201ENSMUST00000073507 1079 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
ShhQ62226 Gm25800-201ENSMUST00000082636 134 ntBASIC3.61□□□□□ -1.83
ShhQ62226 Gm25853-201ENSMUST00000082793 132 ntBASIC3.61□□□□□ -1.83
ShhQ62226 Gm2026-201ENSMUST00000109007 1621 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
ShhQ62226 Gm37879-201ENSMUST00000193112 1995 ntBASIC3.61□□□□□ -1.83
ShhQ62226 Spata31d1c-201ENSMUST00000099427 3390 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
ShhQ62226 Gm10287-202ENSMUST00000180599 4059 ntBASIC3.61□□□□□ -1.83
ShhQ62226 AC153522.2-201ENSMUST00000218389 3853 ntBASIC3.61□□□□□ -1.83
ShhQ62226 Olfr919-202ENSMUST00000215612 1992 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
ShhQ62226 Jrkl-201ENSMUST00000110582 3223 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
ShhQ62226 Gm9911-201ENSMUST00000211467 2802 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Gm597-201ENSMUST00000059937 2887 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
ShhQ62226 Neurod4-201ENSMUST00000061571 3345 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
ShhQ62226 Olfr146-203ENSMUST00000214410 1651 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
ShhQ62226 Gm4736-201ENSMUST00000100870 380 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Gm13076-201ENSMUST00000118041 204 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Rps15a-ps3-201ENSMUST00000121072 395 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Gm6565-201ENSMUST00000121217 438 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Mup-ps22-201ENSMUST00000121611 243 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Gm15949-201ENSMUST00000129485 126 ntTSL 3 BASIC3.6□□□□□ -1.83
ShhQ62226 Gm16351-201ENSMUST00000142008 250 ntTSL 3 BASIC3.6□□□□□ -1.83
ShhQ62226 Gm24550-201ENSMUST00000158648 279 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Gm16572-201ENSMUST00000160258 279 ntTSL 3 BASIC3.6□□□□□ -1.83
ShhQ62226 Gm26871-203ENSMUST00000181060 355 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
ShhQ62226 Ranbp2-ps2-201ENSMUST00000184379 370 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Mir6363-201ENSMUST00000184880 114 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Gm19637-201ENSMUST00000185933 579 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Gm29134-201ENSMUST00000186579 126 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Gm28924-201ENSMUST00000190012 241 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Gm28241-201ENSMUST00000190916 235 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Gm7652-201ENSMUST00000200440 1151 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Gm42665-201ENSMUST00000202100 586 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Gm5001-201ENSMUST00000204361 331 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Nat1-202ENSMUST00000212171 1208 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
ShhQ62226 Gm5358-201ENSMUST00000212814 353 ntBASIC3.6□□□□□ -1.83
ShhQ62226 AC154296.2-201ENSMUST00000214696 545 ntBASIC3.6□□□□□ -1.83
ShhQ62226 CT009748.1-201ENSMUST00000216068 269 ntTSL 5 BASIC3.6□□□□□ -1.83
ShhQ62226 AC100590.3-201ENSMUST00000219355 332 ntTSL 5 BASIC3.6□□□□□ -1.83
ShhQ62226 AC158523.1-201ENSMUST00000221398 328 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Gm22364-201ENSMUST00000083097 98 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Gm4017-201ENSMUST00000084813 338 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Gm6361-201ENSMUST00000091031 435 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Ube2v2-201ENSMUST00000096234 609 ntTSL 3 BASIC3.6□□□□□ -1.83
ShhQ62226 Gm38091-201ENSMUST00000192418 3871 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Vmn2r31-201ENSMUST00000075108 3660 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
ShhQ62226 Obscn-203ENSMUST00000052872 23006 ntTSL 5 BASIC3.6□□□□□ -1.83
ShhQ62226 Esp34-202ENSMUST00000178654 1413 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
ShhQ62226 AC167360.1-201ENSMUST00000222596 2494 ntBASIC3.6□□□□□ -1.83
ShhQ62226 Gm42486-201ENSMUST00000200369 3486 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Erbb4-201ENSMUST00000119142 11782 ntAPPRIS ALT1 TSL 5 BASIC3.59□□□□□ -1.83
ShhQ62226 Vmn1r62-201ENSMUST00000173956 1757 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
ShhQ62226 Smt3h2-ps4-201ENSMUST00000121569 288 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Gm13852-201ENSMUST00000122350 242 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Gm11254-201ENSMUST00000122368 653 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Gm25105-201ENSMUST00000122477 130 ntBASIC3.59□□□□□ -1.83
ShhQ62226 n-R5s192-201ENSMUST00000122577 119 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Gm22718-201ENSMUST00000122701 315 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Gm12150-201ENSMUST00000130874 468 ntTSL 3 BASIC3.59□□□□□ -1.83
ShhQ62226 Gm24784-201ENSMUST00000157640 62 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Gm17119-201ENSMUST00000163943 280 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Gm8224-201ENSMUST00000166178 497 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Vmn2r-ps35-201ENSMUST00000169206 831 ntBASIC3.59□□□□□ -1.83
ShhQ62226 4930555M17Rik-201ENSMUST00000176666 402 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
ShhQ62226 Gm21775-201ENSMUST00000178669 540 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
ShhQ62226 Gm25314-201ENSMUST00000178810 79 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Mir7676-1-201ENSMUST00000183491 62 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Mir7676-2-201ENSMUST00000183523 62 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Mir6914-201ENSMUST00000184999 69 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Gm29296-201ENSMUST00000188146 320 ntTSL 5 BASIC3.59□□□□□ -1.83
ShhQ62226 Gm28299-201ENSMUST00000189908 339 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Gm19193-201ENSMUST00000190263 590 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Gm29848-201ENSMUST00000203107 295 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Gm32381-201ENSMUST00000203192 476 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Crs-ps-201ENSMUST00000203723 760 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Gm45427-201ENSMUST00000209572 1253 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Gm45438-201ENSMUST00000210242 564 ntBASIC3.59□□□□□ -1.83
ShhQ62226 Olfr546-ps1-201ENSMUST00000210328 326 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 76,532 protein–RNA pairs in 87.5 ms