Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Mir28a-201ENSMUST00000083560 86 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm25518-201ENSMUST00000083864 107 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Olfr583-201ENSMUST00000098211 960 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
ShhQ62226 Gm14910-201ENSMUST00000121037 1805 ntBASIC3.64□□□□□ -1.83
ShhQ62226 AC153563.1-202ENSMUST00000217695 1838 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
ShhQ62226 Evi2b-201ENSMUST00000179322 1858 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
ShhQ62226 Nat1-201ENSMUST00000026677 1347 ntAPPRIS P2 BASIC3.64□□□□□ -1.83
ShhQ62226 Olfr988-202ENSMUST00000111597 1702 ntAPPRIS P1 TSL 3 BASIC3.64□□□□□ -1.83
ShhQ62226 Mgat4e-202ENSMUST00000172898 1735 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
ShhQ62226 Olfr111-203ENSMUST00000215424 2548 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
ShhQ62226 Olfr1185-ps1-201ENSMUST00000075025 3344 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
ShhQ62226 Ccr2-202ENSMUST00000165984 3515 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
ShhQ62226 Olfr912-201ENSMUST00000217160 5726 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
ShhQ62226 Gm3584-201ENSMUST00000173822 2565 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Efhc2-201ENSMUST00000026014 2554 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
ShhQ62226 Olfr1226-207ENSMUST00000220416 3387 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
ShhQ62226 Olfr1183-203ENSMUST00000219871 8353 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
ShhQ62226 Gm7452-202ENSMUST00000202891 3039 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Olfr1369-ps1-202ENSMUST00000213326 3707 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
ShhQ62226 4932414N04Rik-201ENSMUST00000055930 3519 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
ShhQ62226 Gpr34-202ENSMUST00000096492 1898 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
ShhQ62226 Olfr629-202ENSMUST00000213906 2548 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
ShhQ62226 Gm22834-201ENSMUST00000102021 79 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Gm23322-201ENSMUST00000104464 167 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Gm12640-201ENSMUST00000120097 310 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Gm14875-201ENSMUST00000120881 319 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Gm5123-201ENSMUST00000121905 837 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Gm5755-201ENSMUST00000152394 837 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Gm23326-201ENSMUST00000157419 105 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Gm28623-201ENSMUST00000187219 192 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Gm20937-202ENSMUST00000189084 811 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
ShhQ62226 Gm36934-201ENSMUST00000192007 306 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Gm37603-201ENSMUST00000192368 219 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Gm18964-201ENSMUST00000193013 563 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Gm37732-201ENSMUST00000194377 316 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Gm17887-201ENSMUST00000200194 547 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Gm44011-201ENSMUST00000203336 394 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Gm44149-201ENSMUST00000204256 226 ntBASIC3.63□□□□□ -1.83
ShhQ62226 AC160124.1-201ENSMUST00000215539 519 ntTSL 2 BASIC3.63□□□□□ -1.83
ShhQ62226 AC155923.1-201ENSMUST00000215676 356 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Olfr1091-ps1-201ENSMUST00000216676 595 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Rpl31-ps2-201ENSMUST00000223231 343 ntBASIC3.63□□□□□ -1.83
ShhQ62226 CT010511.1-201ENSMUST00000224570 315 ntBASIC3.63□□□□□ -1.83
ShhQ62226 AC119573.1-201ENSMUST00000227960 757 ntBASIC3.63□□□□□ -1.83
ShhQ62226 Cdrt4-201ENSMUST00000035854 723 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
ShhQ62226 Olfr131-201ENSMUST00000059560 1030 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
ShhQ62226 AF357428-201ENSMUST00000083815 69 ntBASIC3.63□□□□□ -1.83
ShhQ62226 D030040B21Rik-201ENSMUST00000181371 2788 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
ShhQ62226 Trhr-202ENSMUST00000110289 1745 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
ShhQ62226 Olfr437-202ENSMUST00000205175 2952 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
ShhQ62226 Csn1s1-205ENSMUST00000197631 1359 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
ShhQ62226 AC158805.1-201ENSMUST00000218197 2631 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm42447-201ENSMUST00000200102 2903 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Olfr290-202ENSMUST00000214501 5196 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
ShhQ62226 Olfr290-204ENSMUST00000216367 5182 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
ShhQ62226 Ifi208-201ENSMUST00000085876 2990 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
ShhQ62226 Gm24831-201ENSMUST00000116778 126 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm11718-201ENSMUST00000119942 537 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Sval2-202ENSMUST00000119995 463 ntTSL 3 BASIC3.62□□□□□ -1.83
ShhQ62226 Gm5287-201ENSMUST00000120666 598 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm14765-201ENSMUST00000121954 326 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm12226-201ENSMUST00000144172 876 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm25970-201ENSMUST00000157165 86 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm22491-201ENSMUST00000157190 102 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm25909-201ENSMUST00000157619 121 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm26045-201ENSMUST00000157862 97 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm24853-201ENSMUST00000158026 121 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Olfr296-ps1-201ENSMUST00000173904 1102 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
ShhQ62226 Gm15099-201ENSMUST00000179833 573 ntTSL 5 BASIC3.62□□□□□ -1.83
ShhQ62226 Gm26189-201ENSMUST00000179879 107 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm26871-205ENSMUST00000181926 742 ntTSL 3 BASIC3.62□□□□□ -1.83
ShhQ62226 Gm27249-201ENSMUST00000185049 328 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm19777-201ENSMUST00000191940 358 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm37300-201ENSMUST00000193327 280 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Rpl36a-ps2-201ENSMUST00000197973 321 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm44016-201ENSMUST00000203463 164 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm45031-201ENSMUST00000206800 288 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm45556-201ENSMUST00000210689 345 ntTSL 5 BASIC3.62□□□□□ -1.83
ShhQ62226 AC102369.1-201ENSMUST00000218415 373 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm8249-201ENSMUST00000219225 465 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm8274-201ENSMUST00000219820 463 ntBASIC3.62□□□□□ -1.83
ShhQ62226 CT010444.1-201ENSMUST00000219963 3845 ntBASIC3.62□□□□□ -1.83
ShhQ62226 AC155241.1-201ENSMUST00000222709 415 ntTSL 5 BASIC3.62□□□□□ -1.83
ShhQ62226 AC192333.1-201ENSMUST00000224573 376 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Defb14-201ENSMUST00000052601 204 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
ShhQ62226 n-R5s94-201ENSMUST00000082573 119 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm3867-201ENSMUST00000086108 279 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Gm43870-201ENSMUST00000205102 4369 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Vmn1r185-213ENSMUST00000228676 5199 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
ShhQ62226 Gm20172-201ENSMUST00000193138 1551 ntBASIC3.62□□□□□ -1.83
ShhQ62226 AC167420.1-201ENSMUST00000222999 2121 ntBASIC3.62□□□□□ -1.83
ShhQ62226 Mrgprx2-201ENSMUST00000098433 4610 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
ShhQ62226 Abi3bp-204ENSMUST00000171000 3877 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
ShhQ62226 Olfr986-204ENSMUST00000218134 3487 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
ShhQ62226 Csmd3-204ENSMUST00000160658 12460 ntTSL 5 BASIC3.61□□□□□ -1.83
ShhQ62226 Casp12-201ENSMUST00000027009 2649 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
ShhQ62226 Zfp638-206ENSMUST00000203324 3822 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
ShhQ62226 Olfr713-202ENSMUST00000213623 6329 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
ShhQ62226 Pak3-201ENSMUST00000033640 8348 ntAPPRIS ALT1 TSL 1 (best) BASIC3.61□□□□□ -1.83
ShhQ62226 Inpp4b-201ENSMUST00000042529 4120 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
Retrieved 100 of 76,532 protein–RNA pairs in 82.2 ms