Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 AC121898.1-201ENSMUST00000227599 288 ntBASIC3.66□□□□□ -1.82
ShhQ62226 AC155237.2-201ENSMUST00000228487 478 ntBASIC3.66□□□□□ -1.82
ShhQ62226 AC126690.1-201ENSMUST00000228898 397 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Olfr885-201ENSMUST00000081985 930 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
ShhQ62226 Gm23093-201ENSMUST00000083450 102 ntBASIC3.66□□□□□ -1.82
ShhQ62226 n-R5s182-201ENSMUST00000083889 107 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Trim30d-202ENSMUST00000071069 3282 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
ShhQ62226 Znf41-ps-201ENSMUST00000122051 2413 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Olfr1313-203ENSMUST00000216071 2599 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
ShhQ62226 Gm4224-201ENSMUST00000211557 1594 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
ShhQ62226 AI987944-204ENSMUST00000206801 1701 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
ShhQ62226 Gm5798-201ENSMUST00000164613 1751 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
ShhQ62226 Olfr38-202ENSMUST00000215796 2782 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
ShhQ62226 Gm9343-201ENSMUST00000209016 2609 ntBASIC3.65□□□□□ -1.82
ShhQ62226 Ccr2-201ENSMUST00000055918 2999 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
ShhQ62226 Gm14401-203ENSMUST00000108970 948 ntAPPRIS P1 TSL 3 BASIC3.65□□□□□ -1.83
ShhQ62226 Gm15151-201ENSMUST00000117106 177 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Gm15180-201ENSMUST00000117745 492 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Gm14574-201ENSMUST00000120644 279 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Gm22480-201ENSMUST00000122568 128 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Gm23585-201ENSMUST00000157656 102 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Olfr733-201ENSMUST00000163469 994 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
ShhQ62226 Ear1-202ENSMUST00000179200 519 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
ShhQ62226 Gm10067-201ENSMUST00000179462 348 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Gm8816-201ENSMUST00000182280 1163 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Npn2-202ENSMUST00000189275 235 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Gm37692-201ENSMUST00000192633 232 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Gm567-201ENSMUST00000197127 469 ntTSL 3 BASIC3.65□□□□□ -1.83
ShhQ62226 1700126H18Rik-201ENSMUST00000201903 405 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
ShhQ62226 Gm7039-201ENSMUST00000205138 346 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Gm7407-201ENSMUST00000208301 568 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Gm19140-201ENSMUST00000209790 421 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Gm45673-201ENSMUST00000210293 358 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Gm18903-201ENSMUST00000215343 480 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Olfr27-202ENSMUST00000216405 1125 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
ShhQ62226 RMST_1.1-206ENSMUST00000218255 309 ntTSL 3 BASIC3.65□□□□□ -1.83
ShhQ62226 AC123618.1-201ENSMUST00000220174 360 ntBASIC3.65□□□□□ -1.83
ShhQ62226 AC116589.7-201ENSMUST00000221061 239 ntBASIC3.65□□□□□ -1.83
ShhQ62226 AC164117.1-201ENSMUST00000221726 239 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Olfr1013-201ENSMUST00000065626 918 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
ShhQ62226 Stfa3-201ENSMUST00000068182 412 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
ShhQ62226 Olfr822-201ENSMUST00000080460 942 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
ShhQ62226 Gm22739-201ENSMUST00000083437 160 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Olfr1196-203ENSMUST00000216977 4225 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
ShhQ62226 Olfr609-203ENSMUST00000216360 3295 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
ShhQ62226 Olfr661-202ENSMUST00000214876 3790 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
ShhQ62226 Ankrd28-207ENSMUST00000227863 6616 ntAPPRIS ALT1 BASIC3.65□□□□□ -1.83
ShhQ62226 Gm37498-201ENSMUST00000193524 4002 ntBASIC3.65□□□□□ -1.83
ShhQ62226 Vmn2r82-201ENSMUST00000170596 3045 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
ShhQ62226 Olfr1368-202ENSMUST00000216039 1389 ntAPPRIS P1 TSL 3 BASIC3.64□□□□□ -1.83
ShhQ62226 Olfr235-205ENSMUST00000214638 3459 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
ShhQ62226 Gm3239-201ENSMUST00000163525 1751 ntAPPRIS P5 TSL 5 BASIC3.64□□□□□ -1.83
ShhQ62226 Gm43508-201ENSMUST00000197251 3783 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Dppa1-202ENSMUST00000109227 551 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
ShhQ62226 Gm13331-201ENSMUST00000117500 448 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm13478-201ENSMUST00000118312 413 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm16428-201ENSMUST00000121193 723 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm7618-201ENSMUST00000121643 171 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm12276-201ENSMUST00000121709 301 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Rps13-ps7-201ENSMUST00000122045 368 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm14473-201ENSMUST00000122269 557 ntBASIC3.64□□□□□ -1.83
ShhQ62226 n-R5s45-201ENSMUST00000122592 110 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm6969-201ENSMUST00000140065 342 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Etaa1os-201ENSMUST00000140161 550 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
ShhQ62226 Gm15461-201ENSMUST00000143488 235 ntTSL 3 BASIC3.64□□□□□ -1.83
ShhQ62226 Gm13794-201ENSMUST00000148637 468 ntTSL 3 BASIC3.64□□□□□ -1.83
ShhQ62226 Gm23667-201ENSMUST00000157466 120 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm23084-201ENSMUST00000157850 114 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm22889-201ENSMUST00000158639 58 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm24739-201ENSMUST00000158855 292 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Klra5-204ENSMUST00000169901 792 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
ShhQ62226 Gm15446-203ENSMUST00000170826 192 ntTSL 5 BASIC3.64□□□□□ -1.83
ShhQ62226 Gm22398-201ENSMUST00000174941 125 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm25731-201ENSMUST00000175167 125 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm24464-201ENSMUST00000179697 107 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm28781-201ENSMUST00000185760 696 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm29009-201ENSMUST00000186340 496 ntTSL 5 BASIC3.64□□□□□ -1.83
ShhQ62226 Gm18505-201ENSMUST00000187360 790 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm29307-201ENSMUST00000187367 696 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm29335-201ENSMUST00000188361 459 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm29339-201ENSMUST00000189613 696 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm17916-203ENSMUST00000189918 324 ntTSL 5 BASIC3.64□□□□□ -1.83
ShhQ62226 Gm29407-201ENSMUST00000191468 696 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm36964-201ENSMUST00000191876 198 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm37701-201ENSMUST00000192947 1100 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm17781-201ENSMUST00000195232 649 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm44349-201ENSMUST00000197048 123 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Igkv14-118-2-201ENSMUST00000198287 339 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Igkv14-126-1-201ENSMUST00000199899 346 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm44076-201ENSMUST00000203072 520 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm44726-201ENSMUST00000203427 217 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm35876-201ENSMUST00000205044 459 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm36816-202ENSMUST00000205197 504 ntTSL 5 BASIC3.64□□□□□ -1.83
ShhQ62226 Gm45020-201ENSMUST00000205356 381 ntTSL 3 BASIC3.64□□□□□ -1.83
ShhQ62226 Gm7675-201ENSMUST00000208828 686 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm6929-201ENSMUST00000210930 468 ntBASIC3.64□□□□□ -1.83
ShhQ62226 AC165164.2-201ENSMUST00000220313 392 ntTSL 3 BASIC3.64□□□□□ -1.83
ShhQ62226 Gpx8-201ENSMUST00000022282 1018 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
ShhQ62226 Gm26228-201ENSMUST00000082512 107 ntBASIC3.64□□□□□ -1.83
ShhQ62226 Gm25080-201ENSMUST00000082526 107 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 76,532 protein–RNA pairs in 166.3 ms