Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 A830019L24Rik-201ENSMUST00000197226 1652 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
Rnf40Q3U319 Xpo4-201ENSMUST00000089482 3456 ntAPPRIS ALT1 TSL 5 BASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm15261-201ENSMUST00000136779 2763 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm33680-202ENSMUST00000219411 3401 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm43024-201ENSMUST00000196770 4352 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm24434-201ENSMUST00000104081 132 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm23311-201ENSMUST00000104152 134 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm12244-201ENSMUST00000119500 291 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm14922-201ENSMUST00000121131 163 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm15747-201ENSMUST00000141216 460 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm23752-201ENSMUST00000157584 115 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm24692-201ENSMUST00000157761 146 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm25494-201ENSMUST00000158143 100 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm4152-201ENSMUST00000172675 259 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm26195-201ENSMUST00000175035 101 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Scarletltr-201ENSMUST00000176950 305 ntTSL 5 BASIC5.53□□□□□ -1.52
Rnf40Q3U319 Ccl27b-201ENSMUST00000177785 425 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm10251-201ENSMUST00000178788 384 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
Rnf40Q3U319 Mir6372-201ENSMUST00000185114 109 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm8599-201ENSMUST00000193033 457 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm18011-201ENSMUST00000203717 565 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm45498-201ENSMUST00000210346 283 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm17999-201ENSMUST00000211568 542 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 AC127242.4-201ENSMUST00000221242 470 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 AC154213.2-201ENSMUST00000227138 187 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Rps15a-ps1-201ENSMUST00000071120 393 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm23932-201ENSMUST00000082914 107 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Olfr365-202ENSMUST00000213969 5333 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
Rnf40Q3U319 Smc5-206ENSMUST00000226111 3265 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm43605-201ENSMUST00000199663 3426 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Capn6-201ENSMUST00000087316 3561 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm28634-201ENSMUST00000191087 2613 ntBASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm44724-201ENSMUST00000207119 5548 ntTSL 5 BASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm13972-201ENSMUST00000153726 3164 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
Rnf40Q3U319 Gm14295-202ENSMUST00000132883 2505 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm43696-201ENSMUST00000199385 6071 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 Zfp976-203ENSMUST00000187616 1908 ntTSL 5 BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm12580-201ENSMUST00000127456 1751 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Elavl4-201ENSMUST00000102722 4107 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Elavl4-203ENSMUST00000106597 4149 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Adgrv1-201ENSMUST00000095585 19338 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Olfr684-202ENSMUST00000215552 3174 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Ccr9-204ENSMUST00000168910 2888 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Vmn1r52-202ENSMUST00000226520 3125 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Vmn1r52-205ENSMUST00000227893 3108 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm24272-201ENSMUST00000102329 98 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 Mir1193-201ENSMUST00000116761 121 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm12379-201ENSMUST00000119607 391 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm11742-201ENSMUST00000119903 233 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm14619-201ENSMUST00000120480 168 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm15300-201ENSMUST00000122324 279 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm12976-202ENSMUST00000153817 412 ntTSL 3 BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm23121-201ENSMUST00000157653 173 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm7909-201ENSMUST00000182688 614 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm27761-201ENSMUST00000184091 131 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm28376-201ENSMUST00000186604 176 ntTSL 5 BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm28623-201ENSMUST00000187219 192 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm28075-201ENSMUST00000189179 354 ntTSL 3 BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm43116-201ENSMUST00000199789 195 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm19244-201ENSMUST00000204340 253 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm45553-201ENSMUST00000209929 507 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 9330159F19Rik-202ENSMUST00000213489 2992 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
Rnf40Q3U319 AC121264.1-201ENSMUST00000214412 269 ntTSL 5 BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm29154-234ENSMUST00000215272 750 ntTSL 5 BASIC5.52□□□□□ -1.53
Rnf40Q3U319 AC134254.5-201ENSMUST00000223436 400 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 AC154239.1-201ENSMUST00000228565 406 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 Cenpj-201ENSMUST00000065302 4363 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Ank2-207ENSMUST00000182064 12413 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Olfr390-204ENSMUST00000215161 3740 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Gm37588-201ENSMUST00000195024 2496 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 Olfr303-203ENSMUST00000215532 3572 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
Rnf40Q3U319 3222401L13Rik-202ENSMUST00000192137 6292 ntBASIC5.52□□□□□ -1.53
Rnf40Q3U319 Olfr1263-204ENSMUST00000217065 4186 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
Rnf40Q3U319 Mga-201ENSMUST00000046717 11982 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
Rnf40Q3U319 CT025710.1-201ENSMUST00000222949 2533 ntBASIC5.51□□□□□ -1.53
Rnf40Q3U319 Olfr270-201ENSMUST00000095084 2204 ntAPPRIS ALT1 TSL 5 BASIC5.51□□□□□ -1.53
Rnf40Q3U319 Olfr32-204ENSMUST00000215153 3117 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
Rnf40Q3U319 Acer3-201ENSMUST00000033020 11340 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
Rnf40Q3U319 LOC102637012-201ENSMUST00000217248 2562 ntBASIC5.51□□□□□ -1.53
Rnf40Q3U319 Igkv4-68-201ENSMUST00000103350 394 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
Rnf40Q3U319 Gm11367-201ENSMUST00000117802 120 ntBASIC5.51□□□□□ -1.53
Rnf40Q3U319 Gm11677-201ENSMUST00000121349 977 ntBASIC5.51□□□□□ -1.53
Rnf40Q3U319 Gm11680-201ENSMUST00000146550 439 ntTSL 5 BASIC5.51□□□□□ -1.53
Rnf40Q3U319 Gm25115-201ENSMUST00000157187 140 ntBASIC5.51□□□□□ -1.53
Rnf40Q3U319 Gm23902-201ENSMUST00000157571 134 ntBASIC5.51□□□□□ -1.53
Rnf40Q3U319 Gm22966-201ENSMUST00000157957 129 ntBASIC5.51□□□□□ -1.53
Rnf40Q3U319 Gm23354-201ENSMUST00000158426 104 ntBASIC5.51□□□□□ -1.53
Rnf40Q3U319 1700024B18Rik-201ENSMUST00000190088 423 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
Rnf40Q3U319 Gm38011-201ENSMUST00000193312 279 ntBASIC5.51□□□□□ -1.53
Rnf40Q3U319 Ighv5-3-201ENSMUST00000195336 322 ntBASIC5.51□□□□□ -1.53
Rnf40Q3U319 Igkv1-108-201ENSMUST00000198926 298 ntBASIC5.51□□□□□ -1.53
Rnf40Q3U319 Gm17811-201ENSMUST00000206193 387 ntBASIC5.51□□□□□ -1.53
Rnf40Q3U319 Fkbp1a-ps2-201ENSMUST00000219474 311 ntBASIC5.51□□□□□ -1.53
Rnf40Q3U319 Olfr1370-201ENSMUST00000058168 951 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
Rnf40Q3U319 Gm24204-201ENSMUST00000082950 107 ntBASIC5.51□□□□□ -1.53
Rnf40Q3U319 Abcg2-201ENSMUST00000031822 5717 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
Rnf40Q3U319 Olfr620-201ENSMUST00000052152 3157 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
Rnf40Q3U319 Gm3526-201ENSMUST00000164544 1750 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
Rnf40Q3U319 Gm21035-201ENSMUST00000207867 2608 ntBASIC5.51□□□□□ -1.53
Rnf40Q3U319 Gm45321-201ENSMUST00000209286 2863 ntTSL 5 BASIC5.51□□□□□ -1.53
Retrieved 100 of 76,532 protein–RNA pairs in 87.5 ms