Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm22890-201ENSMUST00000158642 144 ntBASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Gm27660-201ENSMUST00000184028 208 ntBASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Gm38329-201ENSMUST00000193473 427 ntBASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Gm38041-201ENSMUST00000194445 661 ntBASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Gm43035-201ENSMUST00000197626 517 ntBASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Gm42665-201ENSMUST00000202100 586 ntBASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Gm45673-201ENSMUST00000210293 358 ntBASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Lilr4b-211ENSMUST00000219661 1143 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 CT009754.1-201ENSMUST00000223489 558 ntTSL 3 BASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 AC154426.1-201ENSMUST00000225614 1132 ntBASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 AC163295.1-201ENSMUST00000227840 314 ntBASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Gm4211-201ENSMUST00000181103 2220 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Olfr1180-203ENSMUST00000217320 2107 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Olfr588-ps1-201ENSMUST00000118682 4607 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Olfr1123-203ENSMUST00000216208 5245 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Gm28362-201ENSMUST00000189430 2420 ntBASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Olfr235-202ENSMUST00000207969 2447 ntAPPRIS P1 TSL 3 BASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Cntn6-202ENSMUST00000161070 3515 ntTSL 5 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Vmn1r42-202ENSMUST00000226436 4045 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Gm37792-201ENSMUST00000195761 3413 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Jrkl-201ENSMUST00000110582 3223 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Nbeal1-203ENSMUST00000160834 15731 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Zfp595-203ENSMUST00000168892 4040 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Olfr136-202ENSMUST00000208525 2534 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Slco6d1-202ENSMUST00000160796 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Mir599-201ENSMUST00000102378 88 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Trbv16-201ENSMUST00000103274 398 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Gm13687-201ENSMUST00000119857 282 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Gm13239-201ENSMUST00000119920 637 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Gm15986-201ENSMUST00000122153 400 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Gm23463-201ENSMUST00000122468 99 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Gm26027-201ENSMUST00000122725 268 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Mir3070b-201ENSMUST00000175205 89 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Gm20888-201ENSMUST00000178934 567 ntTSL 5 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Obox4-ps39-201ENSMUST00000184306 628 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Gm34302-201ENSMUST00000192926 243 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Gm38044-201ENSMUST00000192964 487 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Gm44393-201ENSMUST00000197418 138 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Gm33501-202ENSMUST00000209983 706 ntTSL 5 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Prl4a1-201ENSMUST00000021779 876 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Olfr638-202ENSMUST00000218325 1158 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 AC161254.1-201ENSMUST00000220310 3842 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Gm33958-201ENSMUST00000222879 450 ntTSL 5 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 CT030182.3-201ENSMUST00000225986 582 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Vmn1r31-204ENSMUST00000226390 912 ntAPPRIS P2 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Vmn1r17-202ENSMUST00000227966 912 ntAPPRIS P2 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Olfr235-201ENSMUST00000073507 1079 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Olfr781-201ENSMUST00000075613 936 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Olfr727-201ENSMUST00000079142 1035 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Snord21-201ENSMUST00000082519 94 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Gm22229-201ENSMUST00000082987 108 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 n-R5s50-201ENSMUST00000083168 111 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Gm25578-201ENSMUST00000083406 104 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Ccr2-201ENSMUST00000055918 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Gm43668-201ENSMUST00000197014 5342 ntBASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Sucnr1-201ENSMUST00000029326 1571 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Nlrp4b-202ENSMUST00000117413 3326 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Txndc9-204ENSMUST00000193832 3472 ntTSL 2 BASIC4.69□□□□□ -1.66
Ddb1Q3U1J4 Olfr347-202ENSMUST00000216882 3385 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Gm14015-201ENSMUST00000130634 3949 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Gm28634-201ENSMUST00000191087 2613 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Mcmdc2-204ENSMUST00000140948 3249 ntTSL 5 BASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Vmn1r89-204ENSMUST00000227239 1992 ntAPPRIS P2 BASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Mir450-2-201ENSMUST00000102444 69 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Gm23744-201ENSMUST00000104231 149 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 S100a5-202ENSMUST00000107329 431 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Gm12156-201ENSMUST00000119188 554 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Hmgb1-ps6-201ENSMUST00000119503 616 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Junos-205ENSMUST00000130684 614 ntTSL 3 BASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Gm13853-201ENSMUST00000155496 557 ntTSL 3 BASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Gm23585-201ENSMUST00000157656 102 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Gm16303-201ENSMUST00000161498 390 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Gm22851-201ENSMUST00000178741 94 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Gm25074-201ENSMUST00000178782 94 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Gm29235-201ENSMUST00000185786 442 ntTSL 5 BASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Gm28628-201ENSMUST00000187006 264 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Gm29064-201ENSMUST00000187014 813 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Gm43932-201ENSMUST00000204499 52 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Olfr1430-ps1-201ENSMUST00000207422 917 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Gm46138-201ENSMUST00000215294 426 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 AC133598.4-202ENSMUST00000225267 469 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 CT025689.4-201ENSMUST00000225926 601 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 AC131029.2-202ENSMUST00000228430 496 ntBASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Olfr1251-201ENSMUST00000214304 3133 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Olfr986-202ENSMUST00000214763 3274 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Hdx-201ENSMUST00000038472 9385 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Zfp260-202ENSMUST00000108200 3604 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
Ddb1Q3U1J4 Obox4-ps12-201ENSMUST00000180084 1362 ntBASIC4.67□□□□□ -1.66
Ddb1Q3U1J4 Skint3-202ENSMUST00000170945 3843 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
Ddb1Q3U1J4 Gm14936-201ENSMUST00000137765 2621 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
Ddb1Q3U1J4 Vmn2r78-201ENSMUST00000170835 2611 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
Ddb1Q3U1J4 Vmn1r121-201ENSMUST00000105197 945 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
Ddb1Q3U1J4 2610042L04Rik-201ENSMUST00000112778 599 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
Ddb1Q3U1J4 Dnaic1-202ENSMUST00000119127 500 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
Ddb1Q3U1J4 Gm7308-201ENSMUST00000121087 447 ntBASIC4.67□□□□□ -1.66
Ddb1Q3U1J4 Gm26020-201ENSMUST00000122729 183 ntBASIC4.67□□□□□ -1.66
Ddb1Q3U1J4 Gm22597-201ENSMUST00000157602 80 ntBASIC4.67□□□□□ -1.66
Ddb1Q3U1J4 Gm4175-201ENSMUST00000172863 945 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
Ddb1Q3U1J4 Gm38076-201ENSMUST00000193889 450 ntBASIC4.67□□□□□ -1.66
Ddb1Q3U1J4 Gm19089-201ENSMUST00000197207 613 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 76,532 protein–RNA pairs in 92.8 ms