Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Scn11aQ9R053 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn11aQ9R053 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn11aQ9R053 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Scn11aQ9R053 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC20.41■□□□□ 0.86
Scn11aQ9R053 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn11aQ9R053 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn11aQ9R053 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn11aQ9R053 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC20.41■□□□□ 0.86
Scn11aQ9R053 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn11aQ9R053 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn11aQ9R053 Dmtn-207ENSMUST00000228001 2437 ntBASIC20.41■□□□□ 0.86
Scn11aQ9R053 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Scn11aQ9R053 AC132104.2-201ENSMUST00000215011 266 ntBASIC20.41■□□□□ 0.86
Scn11aQ9R053 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scn11aQ9R053 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Scn11aQ9R053 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn11aQ9R053 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn11aQ9R053 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn11aQ9R053 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn11aQ9R053 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn11aQ9R053 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn11aQ9R053 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Scn11aQ9R053 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
Scn11aQ9R053 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC20.4■□□□□ 0.86
Scn11aQ9R053 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn11aQ9R053 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn11aQ9R053 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn11aQ9R053 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn11aQ9R053 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn11aQ9R053 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scn11aQ9R053 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Scn11aQ9R053 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC20.39■□□□□ 0.86
Scn11aQ9R053 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC20.39■□□□□ 0.86
Scn11aQ9R053 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Scn11aQ9R053 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC20.39■□□□□ 0.86
Scn11aQ9R053 AC122351.1-201ENSMUST00000220467 126 ntBASIC20.39■□□□□ 0.86
Scn11aQ9R053 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Scn11aQ9R053 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Scn11aQ9R053 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scn11aQ9R053 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Scn11aQ9R053 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Scn11aQ9R053 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Scn11aQ9R053 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Scn11aQ9R053 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Scn11aQ9R053 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC20.39■□□□□ 0.85
Scn11aQ9R053 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Scn11aQ9R053 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Scn11aQ9R053 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Scn11aQ9R053 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scn11aQ9R053 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Scn11aQ9R053 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Scn11aQ9R053 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scn11aQ9R053 Gm15794-201ENSMUST00000120182 631 ntBASIC20.38■□□□□ 0.85
Scn11aQ9R053 Gm43073-201ENSMUST00000198200 1189 ntBASIC20.38■□□□□ 0.85
Scn11aQ9R053 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scn11aQ9R053 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Scn11aQ9R053 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scn11aQ9R053 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Scn11aQ9R053 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Scn11aQ9R053 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn11aQ9R053 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn11aQ9R053 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC20.37■□□□□ 0.85
Scn11aQ9R053 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Scn11aQ9R053 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Gm28659-201ENSMUST00000188013 759 ntBASIC20.36■□□□□ 0.85
Scn11aQ9R053 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Zcchc6-207ENSMUST00000225576 2499 ntBASIC20.36■□□□□ 0.85
Scn11aQ9R053 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC20.36■□□□□ 0.85
Scn11aQ9R053 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC20.36■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 11.6 ms