Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC20.77■□□□□ 0.92
Brf1Q8CFK2 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Brf1Q8CFK2 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Brf1Q8CFK2 Gm17661-201ENSMUST00000170317 270 ntBASIC20.77■□□□□ 0.92
Brf1Q8CFK2 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC20.77■□□□□ 0.92
Brf1Q8CFK2 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Brf1Q8CFK2 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Brf1Q8CFK2 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Brf1Q8CFK2 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Brf1Q8CFK2 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
Brf1Q8CFK2 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
Brf1Q8CFK2 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Brf1Q8CFK2 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Brf1Q8CFK2 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Brf1Q8CFK2 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Brf1Q8CFK2 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Brf1Q8CFK2 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Brf1Q8CFK2 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Brf1Q8CFK2 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Brf1Q8CFK2 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Brf1Q8CFK2 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Brf1Q8CFK2 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC20.76■□□□□ 0.91
Brf1Q8CFK2 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Brf1Q8CFK2 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Brf1Q8CFK2 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Brf1Q8CFK2 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Brf1Q8CFK2 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Brf1Q8CFK2 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Brf1Q8CFK2 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Brf1Q8CFK2 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Brf1Q8CFK2 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Brf1Q8CFK2 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Brf1Q8CFK2 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Brf1Q8CFK2 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Brf1Q8CFK2 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC20.75■□□□□ 0.91
Brf1Q8CFK2 Gm9731-201ENSMUST00000209480 747 ntBASIC20.75■□□□□ 0.91
Brf1Q8CFK2 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Brf1Q8CFK2 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Brf1Q8CFK2 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Brf1Q8CFK2 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Brf1Q8CFK2 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Brf1Q8CFK2 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Brf1Q8CFK2 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC20.75■□□□□ 0.91
Brf1Q8CFK2 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Brf1Q8CFK2 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
Brf1Q8CFK2 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC20.74■□□□□ 0.91
Brf1Q8CFK2 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Brf1Q8CFK2 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC20.74■□□□□ 0.91
Brf1Q8CFK2 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Brf1Q8CFK2 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Brf1Q8CFK2 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
Brf1Q8CFK2 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Brf1Q8CFK2 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Brf1Q8CFK2 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC20.74■□□□□ 0.91
Brf1Q8CFK2 AC135963.1-201ENSMUST00000211640 717 ntBASIC20.74■□□□□ 0.91
Brf1Q8CFK2 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC20.74■□□□□ 0.91
Brf1Q8CFK2 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Brf1Q8CFK2 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Brf1Q8CFK2 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Brf1Q8CFK2 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Brf1Q8CFK2 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Brf1Q8CFK2 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Brf1Q8CFK2 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Brf1Q8CFK2 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Brf1Q8CFK2 Gm5898-201ENSMUST00000121016 2071 ntBASIC20.73■□□□□ 0.91
Brf1Q8CFK2 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Brf1Q8CFK2 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Brf1Q8CFK2 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC20.73■□□□□ 0.91
Brf1Q8CFK2 Gm20472-201ENSMUST00000174403 1240 ntBASIC20.73■□□□□ 0.91
Brf1Q8CFK2 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Brf1Q8CFK2 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Brf1Q8CFK2 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Brf1Q8CFK2 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Brf1Q8CFK2 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Brf1Q8CFK2 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Gm15635-204ENSMUST00000208024 2539 ntBASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Brf1Q8CFK2 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms