Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Usp40Q8BWR4 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Usp40Q8BWR4 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Usp40Q8BWR4 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC23.61■■□□□ 1.37
Usp40Q8BWR4 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Usp40Q8BWR4 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Usp40Q8BWR4 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
Usp40Q8BWR4 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Usp40Q8BWR4 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Usp40Q8BWR4 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Usp40Q8BWR4 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Usp40Q8BWR4 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Usp40Q8BWR4 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Usp40Q8BWR4 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Usp40Q8BWR4 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Usp40Q8BWR4 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Usp40Q8BWR4 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Usp40Q8BWR4 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
Usp40Q8BWR4 Gm14464-201ENSMUST00000119658 1254 ntBASIC23.6■■□□□ 1.37
Usp40Q8BWR4 AC122351.1-201ENSMUST00000220467 126 ntBASIC23.6■■□□□ 1.37
Usp40Q8BWR4 Otx2os1-206ENSMUST00000228153 787 ntBASIC23.6■■□□□ 1.37
Usp40Q8BWR4 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
Usp40Q8BWR4 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
Usp40Q8BWR4 Cxcl14-202ENSMUST00000224801 1467 ntBASIC23.6■■□□□ 1.37
Usp40Q8BWR4 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Usp40Q8BWR4 Dmtn-207ENSMUST00000228001 2437 ntBASIC23.6■■□□□ 1.37
Usp40Q8BWR4 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Usp40Q8BWR4 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Usp40Q8BWR4 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Gm27742-201ENSMUST00000184667 60 ntBASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Usp40Q8BWR4 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Usp40Q8BWR4 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Usp40Q8BWR4 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC23.58■■□□□ 1.37
Usp40Q8BWR4 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Usp40Q8BWR4 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC23.58■■□□□ 1.37
Usp40Q8BWR4 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC23.58■■□□□ 1.37
Usp40Q8BWR4 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Usp40Q8BWR4 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Usp40Q8BWR4 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Usp40Q8BWR4 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
Usp40Q8BWR4 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Usp40Q8BWR4 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 Gm18669-201ENSMUST00000216049 778 ntBASIC23.57■■□□□ 1.36
Usp40Q8BWR4 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Usp40Q8BWR4 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
Usp40Q8BWR4 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Usp40Q8BWR4 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
Usp40Q8BWR4 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Usp40Q8BWR4 Gm13186-201ENSMUST00000118031 316 ntBASIC23.56■■□□□ 1.36
Usp40Q8BWR4 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Usp40Q8BWR4 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Usp40Q8BWR4 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
Usp40Q8BWR4 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Usp40Q8BWR4 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Usp40Q8BWR4 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Usp40Q8BWR4 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
Usp40Q8BWR4 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC23.56■■□□□ 1.36
Usp40Q8BWR4 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Usp40Q8BWR4 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Usp40Q8BWR4 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Usp40Q8BWR4 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Usp40Q8BWR4 Gm37194-201ENSMUST00000193092 3031 ntBASIC23.55■■□□□ 1.36
Usp40Q8BWR4 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Usp40Q8BWR4 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Usp40Q8BWR4 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Usp40Q8BWR4 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 53.2 ms