Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ubp1Q811S7 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ubp1Q811S7 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Ubp1Q811S7 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
Ubp1Q811S7 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ubp1Q811S7 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ubp1Q811S7 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ubp1Q811S7 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ubp1Q811S7 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Ubp1Q811S7 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC16.95■□□□□ 0.3
Ubp1Q811S7 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Ubp1Q811S7 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ubp1Q811S7 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC16.95■□□□□ 0.3
Ubp1Q811S7 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ubp1Q811S7 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ubp1Q811S7 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
Ubp1Q811S7 Gm43702-201ENSMUST00000198772 2546 ntBASIC16.95■□□□□ 0.3
Ubp1Q811S7 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ubp1Q811S7 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ubp1Q811S7 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ubp1Q811S7 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ubp1Q811S7 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ubp1Q811S7 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ubp1Q811S7 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Ubp1Q811S7 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
Ubp1Q811S7 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ubp1Q811S7 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Ubp1Q811S7 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Ubp1Q811S7 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ubp1Q811S7 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ubp1Q811S7 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ubp1Q811S7 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ubp1Q811S7 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ubp1Q811S7 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC16.94■□□□□ 0.3
Ubp1Q811S7 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Gm19721-201ENSMUST00000195284 1764 ntBASIC16.93■□□□□ 0.3
Ubp1Q811S7 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC16.93■□□□□ 0.3
Ubp1Q811S7 Gm20472-201ENSMUST00000174403 1240 ntBASIC16.93■□□□□ 0.3
Ubp1Q811S7 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Gm38027-201ENSMUST00000192315 235 ntBASIC16.93■□□□□ 0.3
Ubp1Q811S7 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Ubp1Q811S7 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ubp1Q811S7 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Ubp1Q811S7 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC16.92■□□□□ 0.3
Ubp1Q811S7 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ubp1Q811S7 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Ubp1Q811S7 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ubp1Q811S7 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ubp1Q811S7 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Ubp1Q811S7 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Ubp1Q811S7 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC16.92■□□□□ 0.3
Ubp1Q811S7 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC16.92■□□□□ 0.3
Ubp1Q811S7 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ubp1Q811S7 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC16.92■□□□□ 0.3
Ubp1Q811S7 Gm21814-202ENSMUST00000203277 873 ntBASIC16.92■□□□□ 0.3
Ubp1Q811S7 Gm3375-201ENSMUST00000203929 796 ntBASIC16.92■□□□□ 0.3
Ubp1Q811S7 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC16.92■□□□□ 0.3
Ubp1Q811S7 Odf3b-204ENSMUST00000227834 930 ntBASIC16.92■□□□□ 0.3
Ubp1Q811S7 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Ubp1Q811S7 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC16.92■□□□□ 0.3
Ubp1Q811S7 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ubp1Q811S7 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Ubp1Q811S7 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ubp1Q811S7 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ubp1Q811S7 Gm8969-201ENSMUST00000199694 526 ntBASIC16.91■□□□□ 0.3
Ubp1Q811S7 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ubp1Q811S7 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ubp1Q811S7 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Ubp1Q811S7 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ubp1Q811S7 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubp1Q811S7 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubp1Q811S7 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubp1Q811S7 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ubp1Q811S7 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubp1Q811S7 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubp1Q811S7 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Ubp1Q811S7 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubp1Q811S7 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC16.9■□□□□ 0.3
Ubp1Q811S7 AC135963.1-201ENSMUST00000211640 717 ntBASIC16.9■□□□□ 0.3
Ubp1Q811S7 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ubp1Q811S7 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubp1Q811S7 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubp1Q811S7 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Ubp1Q811S7 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ubp1Q811S7 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubp1Q811S7 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms