Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Smarca1Q6PGB8 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Smarca1Q6PGB8 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Smarca1Q6PGB8 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 Gm43799-201ENSMUST00000201845 579 ntBASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Smarca1Q6PGB8 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 AC153881.2-201ENSMUST00000214877 204 ntBASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Smarca1Q6PGB8 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Smarca1Q6PGB8 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Smarca1Q6PGB8 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Smarca1Q6PGB8 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Smarca1Q6PGB8 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Smarca1Q6PGB8 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
Smarca1Q6PGB8 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Smarca1Q6PGB8 Gm9694-201ENSMUST00000193347 1189 ntBASIC19.11■□□□□ 0.65
Smarca1Q6PGB8 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Smarca1Q6PGB8 AC130671.1-201ENSMUST00000227384 1237 ntBASIC19.11■□□□□ 0.65
Smarca1Q6PGB8 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Smarca1Q6PGB8 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Smarca1Q6PGB8 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Smarca1Q6PGB8 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Smarca1Q6PGB8 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Smarca1Q6PGB8 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC19.11■□□□□ 0.65
Smarca1Q6PGB8 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Gm9987-201ENSMUST00000069768 567 ntBASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Smarca1Q6PGB8 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Smarca1Q6PGB8 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Smarca1Q6PGB8 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Smarca1Q6PGB8 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC19.09■□□□□ 0.65
Smarca1Q6PGB8 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Smarca1Q6PGB8 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
Smarca1Q6PGB8 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC19.09■□□□□ 0.65
Smarca1Q6PGB8 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC19.09■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 63.1 ms