Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nup98Q6PFD9 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nup98Q6PFD9 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nup98Q6PFD9 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Nup98Q6PFD9 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC20.3■□□□□ 0.84
Nup98Q6PFD9 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nup98Q6PFD9 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Nup98Q6PFD9 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nup98Q6PFD9 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup98Q6PFD9 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup98Q6PFD9 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup98Q6PFD9 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup98Q6PFD9 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup98Q6PFD9 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup98Q6PFD9 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup98Q6PFD9 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC20.28■□□□□ 0.84
Nup98Q6PFD9 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup98Q6PFD9 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup98Q6PFD9 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup98Q6PFD9 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup98Q6PFD9 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC20.28■□□□□ 0.84
Nup98Q6PFD9 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nup98Q6PFD9 Zcchc6-207ENSMUST00000225576 2499 ntBASIC20.28■□□□□ 0.84
Nup98Q6PFD9 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC20.27■□□□□ 0.84
Nup98Q6PFD9 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC20.27■□□□□ 0.84
Nup98Q6PFD9 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nup98Q6PFD9 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nup98Q6PFD9 Fam105a-203ENSMUST00000226170 3043 ntBASIC20.27■□□□□ 0.84
Nup98Q6PFD9 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nup98Q6PFD9 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nup98Q6PFD9 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nup98Q6PFD9 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Nup98Q6PFD9 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC20.27■□□□□ 0.84
Nup98Q6PFD9 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Nup98Q6PFD9 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
Nup98Q6PFD9 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC20.27■□□□□ 0.83
Nup98Q6PFD9 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Nup98Q6PFD9 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup98Q6PFD9 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup98Q6PFD9 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Nup98Q6PFD9 Mir3081-201ENSMUST00000175305 84 ntBASIC20.26■□□□□ 0.83
Nup98Q6PFD9 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Nup98Q6PFD9 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup98Q6PFD9 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup98Q6PFD9 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Nup98Q6PFD9 Tfap2a-209ENSMUST00000225180 1828 ntBASIC20.26■□□□□ 0.83
Nup98Q6PFD9 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC20.25■□□□□ 0.83
Nup98Q6PFD9 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Nup98Q6PFD9 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Nup98Q6PFD9 AC164629.2-201ENSMUST00000217916 270 ntBASIC20.25■□□□□ 0.83
Nup98Q6PFD9 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Nup98Q6PFD9 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup98Q6PFD9 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC20.25■□□□□ 0.83
Nup98Q6PFD9 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Nup98Q6PFD9 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup98Q6PFD9 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC20.25■□□□□ 0.83
Nup98Q6PFD9 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup98Q6PFD9 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup98Q6PFD9 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Nup98Q6PFD9 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC20.25■□□□□ 0.83
Nup98Q6PFD9 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup98Q6PFD9 AC153889.1-201ENSMUST00000219257 330 ntBASIC20.25■□□□□ 0.83
Nup98Q6PFD9 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup98Q6PFD9 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
Nup98Q6PFD9 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Nup98Q6PFD9 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Nup98Q6PFD9 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Nup98Q6PFD9 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nup98Q6PFD9 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Nup98Q6PFD9 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Nup98Q6PFD9 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nup98Q6PFD9 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC20.24■□□□□ 0.83
Nup98Q6PFD9 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nup98Q6PFD9 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nup98Q6PFD9 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nup98Q6PFD9 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
Nup98Q6PFD9 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nup98Q6PFD9 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nup98Q6PFD9 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Nup98Q6PFD9 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC20.23■□□□□ 0.83
Nup98Q6PFD9 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Nup98Q6PFD9 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nup98Q6PFD9 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms