Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Gm15173-201ENSMUST00000122049 433 ntBASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col27a1Q5QNQ9 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col27a1Q5QNQ9 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col27a1Q5QNQ9 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col27a1Q5QNQ9 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Col27a1Q5QNQ9 Gm18856-201ENSMUST00000178096 1374 ntBASIC16.65■□□□□ 0.26
Col27a1Q5QNQ9 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col27a1Q5QNQ9 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col27a1Q5QNQ9 Gm9727-201ENSMUST00000161387 555 ntBASIC16.65■□□□□ 0.26
Col27a1Q5QNQ9 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC16.65■□□□□ 0.26
Col27a1Q5QNQ9 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col27a1Q5QNQ9 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Col27a1Q5QNQ9 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col27a1Q5QNQ9 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col27a1Q5QNQ9 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
Col27a1Q5QNQ9 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Col27a1Q5QNQ9 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 Gm6550-201ENSMUST00000187574 993 ntBASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col27a1Q5QNQ9 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Gm43545-201ENSMUST00000196765 2779 ntBASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Gm29707-201ENSMUST00000196325 491 ntBASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col27a1Q5QNQ9 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Rbfox2-207ENSMUST00000227533 1041 ntBASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col27a1Q5QNQ9 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Col27a1Q5QNQ9 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms