Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Shmt1P50431 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Shmt1P50431 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Shmt1P50431 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC18.21■□□□□ 0.51
Shmt1P50431 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Shmt1P50431 Gm18959-201ENSMUST00000208954 655 ntBASIC18.21■□□□□ 0.51
Shmt1P50431 Gm7370-201ENSMUST00000219471 767 ntBASIC18.21■□□□□ 0.51
Shmt1P50431 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Shmt1P50431 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Shmt1P50431 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Shmt1P50431 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Shmt1P50431 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Shmt1P50431 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Shmt1P50431 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.2■□□□□ 0.5
Shmt1P50431 Gm8969-201ENSMUST00000199694 526 ntBASIC18.2■□□□□ 0.5
Shmt1P50431 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Shmt1P50431 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC18.2■□□□□ 0.5
Shmt1P50431 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Shmt1P50431 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shmt1P50431 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shmt1P50431 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Shmt1P50431 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Shmt1P50431 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC18.19■□□□□ 0.5
Shmt1P50431 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC18.19■□□□□ 0.5
Shmt1P50431 Gm45058-201ENSMUST00000205810 766 ntBASIC18.19■□□□□ 0.5
Shmt1P50431 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shmt1P50431 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shmt1P50431 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shmt1P50431 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shmt1P50431 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shmt1P50431 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shmt1P50431 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
Shmt1P50431 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shmt1P50431 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shmt1P50431 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shmt1P50431 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Shmt1P50431 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC18.18■□□□□ 0.5
Shmt1P50431 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Shmt1P50431 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Shmt1P50431 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Shmt1P50431 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC18.18■□□□□ 0.5
Shmt1P50431 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Shmt1P50431 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.18■□□□□ 0.5
Shmt1P50431 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.18■□□□□ 0.5
Shmt1P50431 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC18.18■□□□□ 0.5
Shmt1P50431 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Shmt1P50431 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Shmt1P50431 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Shmt1P50431 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Shmt1P50431 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Shmt1P50431 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shmt1P50431 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shmt1P50431 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shmt1P50431 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shmt1P50431 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shmt1P50431 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Shmt1P50431 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Shmt1P50431 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shmt1P50431 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Shmt1P50431 Mir5130-201ENSMUST00000175160 84 ntBASIC18.17■□□□□ 0.5
Shmt1P50431 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shmt1P50431 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shmt1P50431 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shmt1P50431 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Shmt1P50431 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shmt1P50431 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC18.17■□□□□ 0.5
Shmt1P50431 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shmt1P50431 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shmt1P50431 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Shmt1P50431 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shmt1P50431 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Shmt1P50431 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Shmt1P50431 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Shmt1P50431 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Shmt1P50431 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC18.16■□□□□ 0.5
Shmt1P50431 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Shmt1P50431 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC18.16■□□□□ 0.5
Shmt1P50431 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Shmt1P50431 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Shmt1P50431 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Shmt1P50431 Gm43702-201ENSMUST00000198772 2546 ntBASIC18.16■□□□□ 0.5
Shmt1P50431 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Shmt1P50431 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Shmt1P50431 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shmt1P50431 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Shmt1P50431 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Shmt1P50431 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Shmt1P50431 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shmt1P50431 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shmt1P50431 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shmt1P50431 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC18.15■□□□□ 0.5
Shmt1P50431 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC18.15■□□□□ 0.5
Shmt1P50431 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shmt1P50431 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shmt1P50431 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Shmt1P50431 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Shmt1P50431 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.5
Shmt1P50431 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Shmt1P50431 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Shmt1P50431 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms