Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
Msx1P13297 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msx1P13297 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msx1P13297 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msx1P13297 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Msx1P13297 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC16.31■□□□□ 0.2
Msx1P13297 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Msx1P13297 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 Zcchc6-207ENSMUST00000225576 2499 ntBASIC16.3■□□□□ 0.2
Msx1P13297 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Msx1P13297 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Msx1P13297 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC16.3■□□□□ 0.2
Msx1P13297 AC159205.3-201ENSMUST00000224614 874 ntBASIC16.3■□□□□ 0.2
Msx1P13297 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Msx1P13297 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Msx1P13297 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Msx1P13297 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Msx1P13297 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Msx1P13297 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Msx1P13297 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC16.29■□□□□ 0.2
Msx1P13297 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Msx1P13297 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Msx1P13297 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Msx1P13297 Ank2-226ENSMUST00000189368 339 ntBASIC16.29■□□□□ 0.2
Msx1P13297 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Msx1P13297 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Msx1P13297 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC16.29■□□□□ 0.2
Msx1P13297 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Msx1P13297 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Msx1P13297 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Msx1P13297 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Msx1P13297 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC16.29■□□□□ 0.2
Msx1P13297 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Msx1P13297 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Msx1P13297 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC16.28■□□□□ 0.2
Msx1P13297 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC16.28■□□□□ 0.2
Msx1P13297 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
Msx1P13297 Gm2274-201ENSMUST00000184539 609 ntBASIC16.28■□□□□ 0.2
Msx1P13297 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC16.28■□□□□ 0.2
Msx1P13297 AC134329.2-201ENSMUST00000217897 428 ntBASIC16.28■□□□□ 0.2
Msx1P13297 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC16.28■□□□□ 0.2
Msx1P13297 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Msx1P13297 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Msx1P13297 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Msx1P13297 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Msx1P13297 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Msx1P13297 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Msx1P13297 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Msx1P13297 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
Msx1P13297 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Msx1P13297 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC16.27■□□□□ 0.2
Msx1P13297 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC16.27■□□□□ 0.2
Msx1P13297 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
Msx1P13297 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Msx1P13297 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Msx1P13297 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Msx1P13297 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Msx1P13297 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Msx1P13297 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Msx1P13297 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Msx1P13297 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC16.27■□□□□ 0.19
Msx1P13297 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Msx1P13297 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC16.27■□□□□ 0.19
Msx1P13297 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Msx1P13297 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Msx1P13297 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Msx1P13297 Gm37820-201ENSMUST00000194021 2147 ntBASIC16.27■□□□□ 0.19
Msx1P13297 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Msx1P13297 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms