Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col3a1P08121 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC20.56■□□□□ 0.88
Col3a1P08121 Gm18115-201ENSMUST00000221209 621 ntBASIC20.56■□□□□ 0.88
Col3a1P08121 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col3a1P08121 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Col3a1P08121 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col3a1P08121 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Col3a1P08121 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
Col3a1P08121 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC20.55■□□□□ 0.88
Col3a1P08121 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col3a1P08121 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col3a1P08121 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC20.55■□□□□ 0.88
Col3a1P08121 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col3a1P08121 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col3a1P08121 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col3a1P08121 Gm15794-201ENSMUST00000120182 631 ntBASIC20.55■□□□□ 0.88
Col3a1P08121 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
Col3a1P08121 Gm45328-201ENSMUST00000210942 917 ntBASIC20.55■□□□□ 0.88
Col3a1P08121 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col3a1P08121 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col3a1P08121 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC20.54■□□□□ 0.88
Col3a1P08121 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col3a1P08121 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC20.54■□□□□ 0.88
Col3a1P08121 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC20.54■□□□□ 0.88
Col3a1P08121 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC20.54■□□□□ 0.88
Col3a1P08121 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col3a1P08121 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col3a1P08121 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC20.54■□□□□ 0.88
Col3a1P08121 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col3a1P08121 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col3a1P08121 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col3a1P08121 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col3a1P08121 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col3a1P08121 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col3a1P08121 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col3a1P08121 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Col3a1P08121 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col3a1P08121 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col3a1P08121 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col3a1P08121 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col3a1P08121 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col3a1P08121 Ighv6-1-201ENSMUST00000193612 343 ntBASIC20.53■□□□□ 0.88
Col3a1P08121 Gm44450-201ENSMUST00000199528 114 ntBASIC20.53■□□□□ 0.88
Col3a1P08121 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col3a1P08121 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC20.53■□□□□ 0.88
Col3a1P08121 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col3a1P08121 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col3a1P08121 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col3a1P08121 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col3a1P08121 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col3a1P08121 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col3a1P08121 Tfap2a-209ENSMUST00000225180 1828 ntBASIC20.53■□□□□ 0.88
Col3a1P08121 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col3a1P08121 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col3a1P08121 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col3a1P08121 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Col3a1P08121 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col3a1P08121 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col3a1P08121 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Col3a1P08121 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Col3a1P08121 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col3a1P08121 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC20.52■□□□□ 0.88
Col3a1P08121 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 Phf7-203ENSMUST00000226565 1971 ntBASIC20.51■□□□□ 0.87
Col3a1P08121 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC20.51■□□□□ 0.87
Col3a1P08121 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Col3a1P08121 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 Gm11336-201ENSMUST00000118168 334 ntBASIC20.51■□□□□ 0.87
Col3a1P08121 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 Mir3081-201ENSMUST00000175305 84 ntBASIC20.51■□□□□ 0.87
Col3a1P08121 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col3a1P08121 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Col3a1P08121 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Col3a1P08121 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col3a1P08121 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col3a1P08121 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col3a1P08121 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col3a1P08121 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col3a1P08121 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Col3a1P08121 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col3a1P08121 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col3a1P08121 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col3a1P08121 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Col3a1P08121 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col3a1P08121 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col3a1P08121 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col3a1P08121 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms