Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim55G3X8Y1 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim55G3X8Y1 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Appbp2os-202ENSMUST00000206972 447 ntBASIC17.72■□□□□ 0.43
Trim55G3X8Y1 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim55G3X8Y1 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim55G3X8Y1 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim55G3X8Y1 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim55G3X8Y1 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC17.71■□□□□ 0.43
Trim55G3X8Y1 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim55G3X8Y1 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Trim55G3X8Y1 Gm12821-201ENSMUST00000120022 600 ntBASIC17.71■□□□□ 0.43
Trim55G3X8Y1 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim55G3X8Y1 Gm45212-201ENSMUST00000205831 3403 ntBASIC17.71■□□□□ 0.43
Trim55G3X8Y1 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim55G3X8Y1 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
Trim55G3X8Y1 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim55G3X8Y1 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
Trim55G3X8Y1 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
Trim55G3X8Y1 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Trim55G3X8Y1 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Trim55G3X8Y1 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim55G3X8Y1 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC17.69■□□□□ 0.42
Trim55G3X8Y1 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim55G3X8Y1 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC17.69■□□□□ 0.42
Trim55G3X8Y1 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim55G3X8Y1 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim55G3X8Y1 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim55G3X8Y1 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim55G3X8Y1 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim55G3X8Y1 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim55G3X8Y1 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim55G3X8Y1 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim55G3X8Y1 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim55G3X8Y1 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 75.8 ms