Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC15.57■□□□□ 0.08
Pcdhgb8A0A140LI48 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Pcdhgb8A0A140LI48 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Pcdhgb8A0A140LI48 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Pcdhgb8A0A140LI48 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Pcdhgb8A0A140LI48 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Pcdhgb8A0A140LI48 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
Pcdhgb8A0A140LI48 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
Pcdhgb8A0A140LI48 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC15.55■□□□□ 0.08
Pcdhgb8A0A140LI48 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC15.55■□□□□ 0.08
Pcdhgb8A0A140LI48 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
Pcdhgb8A0A140LI48 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Pcdhgb8A0A140LI48 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Pcdhgb8A0A140LI48 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC15.55■□□□□ 0.08
Pcdhgb8A0A140LI48 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Pcdhgb8A0A140LI48 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Pcdhgb8A0A140LI48 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Pcdhgb8A0A140LI48 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Pcdhgb8A0A140LI48 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Pcdhgb8A0A140LI48 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Pcdhgb8A0A140LI48 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Pcdhgb8A0A140LI48 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Pcdhgb8A0A140LI48 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC15.54■□□□□ 0.08
Pcdhgb8A0A140LI48 Gm37519-201ENSMUST00000191687 2210 ntBASIC15.54■□□□□ 0.08
Pcdhgb8A0A140LI48 Gm21596-201ENSMUST00000178049 1316 ntBASIC15.54■□□□□ 0.08
Pcdhgb8A0A140LI48 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Pcdhgb8A0A140LI48 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Pcdhgb8A0A140LI48 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Pcdhgb8A0A140LI48 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Pcdhgb8A0A140LI48 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Pcdhgb8A0A140LI48 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Pcdhgb8A0A140LI48 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Pcdhgb8A0A140LI48 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Pcdhgb8A0A140LI48 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Gm8309-201ENSMUST00000206627 1448 ntBASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Gm27275-201ENSMUST00000184318 272 ntBASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Gm18666-201ENSMUST00000190039 958 ntBASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 AC140264.2-202ENSMUST00000218746 817 ntBASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Gm10812-201ENSMUST00000099864 546 ntBASIC15.52■□□□□ 0.08
Pcdhgb8A0A140LI48 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Pcdhgb8A0A140LI48 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms