Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm28598-201ENSMUST00000186490 615 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm29268-201ENSMUST00000188669 615 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm29186-201ENSMUST00000189178 660 ntTSL 2 BASIC3.68□□□□□ -1.82
ShhQ62226 Gm29218-205ENSMUST00000190846 615 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm28978-201ENSMUST00000191120 615 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm37172-201ENSMUST00000191926 615 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm9722-201ENSMUST00000194568 802 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm43424-201ENSMUST00000200484 253 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm43505-201ENSMUST00000200579 139 ntBASIC3.68□□□□□ -1.82
ShhQ62226 4930587E11Rik-202ENSMUST00000204857 807 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
ShhQ62226 Gm44609-201ENSMUST00000207157 460 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm44784-201ENSMUST00000207396 460 ntTSL 5 BASIC3.68□□□□□ -1.82
ShhQ62226 Olfr936-202ENSMUST00000216912 937 ntBASIC3.68□□□□□ -1.82
ShhQ62226 AC153141.1-201ENSMUST00000218636 501 ntBASIC3.68□□□□□ -1.82
ShhQ62226 AC174082.1-201ENSMUST00000221106 307 ntBASIC3.68□□□□□ -1.82
ShhQ62226 AC167192.2-201ENSMUST00000224794 198 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm26121-201ENSMUST00000083364 162 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm22740-201ENSMUST00000083439 109 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm23848-201ENSMUST00000083826 106 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Aspn-202ENSMUST00000177948 2329 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
ShhQ62226 Olfr1326-ps1-201ENSMUST00000059880 3637 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
ShhQ62226 Gm43896-201ENSMUST00000203440 2032 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Csmd3-209ENSMUST00000162830 13012 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
ShhQ62226 Vmn1r215-202ENSMUST00000228092 2790 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
ShhQ62226 Olfr1042-202ENSMUST00000215624 5096 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
ShhQ62226 Mmrn1-203ENSMUST00000204333 4472 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
ShhQ62226 Zfp932-207ENSMUST00000187241 1581 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
ShhQ62226 Gm37006-201ENSMUST00000195253 2674 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Gm5127-202ENSMUST00000101297 1809 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
ShhQ62226 Olfr1484-205ENSMUST00000216369 3764 ntTSL 5 BASIC3.67□□□□□ -1.82
ShhQ62226 Vmn2r35-201ENSMUST00000169683 2586 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
ShhQ62226 Vwc2l-203ENSMUST00000161937 4323 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
ShhQ62226 Olfr263-202ENSMUST00000215804 3963 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
ShhQ62226 Gm14305-202ENSMUST00000108981 1646 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
ShhQ62226 Gm45176-201ENSMUST00000207696 4096 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Rpl10-ps4-201ENSMUST00000117120 286 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Gm12982-201ENSMUST00000117408 190 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Gm11490-201ENSMUST00000118128 272 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Gm11281-201ENSMUST00000141391 576 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Gm24439-201ENSMUST00000157894 117 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Gm23666-201ENSMUST00000158053 116 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Gm24898-201ENSMUST00000158133 106 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Gm25606-201ENSMUST00000158363 95 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Ccdc152-201ENSMUST00000165386 798 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
ShhQ62226 Gm22290-201ENSMUST00000177655 107 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Gm22583-201ENSMUST00000178031 107 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Gm11395-201ENSMUST00000181011 499 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Gm26701-201ENSMUST00000181571 234 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Snhg5-202ENSMUST00000182232 781 ntTSL 2 BASIC3.67□□□□□ -1.82
ShhQ62226 Gm27226-201ENSMUST00000184676 511 ntTSL 2 BASIC3.67□□□□□ -1.82
ShhQ62226 Gm37898-201ENSMUST00000193781 174 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
ShhQ62226 Ighv1-40-201ENSMUST00000194231 345 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Gm18971-201ENSMUST00000197240 374 ntBASIC3.67□□□□□ -1.82
ShhQ62226 2810432F15Rik-201ENSMUST00000198632 657 ntTSL 5 BASIC3.67□□□□□ -1.82
ShhQ62226 Gm7041-201ENSMUST00000201227 524 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Gm45105-201ENSMUST00000207824 397 ntBASIC3.67□□□□□ -1.82
ShhQ62226 4930558N11Rik-204ENSMUST00000211512 516 ntTSL 3 BASIC3.67□□□□□ -1.82
ShhQ62226 Gm10264-201ENSMUST00000220589 429 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Eif1-ps2-201ENSMUST00000221990 339 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Gm40548-201ENSMUST00000223522 644 ntTSL 3 BASIC3.67□□□□□ -1.82
ShhQ62226 AC139750.2-201ENSMUST00000224424 386 ntBASIC3.67□□□□□ -1.82
ShhQ62226 AC102575.1-201ENSMUST00000225348 547 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Defb7-201ENSMUST00000047851 306 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
ShhQ62226 Vmn2r106-201ENSMUST00000167464 2589 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
ShhQ62226 Gm45483-201ENSMUST00000209845 1682 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Olfr215-201ENSMUST00000061723 4112 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
ShhQ62226 Gm15773-201ENSMUST00000118665 1448 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Vmn2r32-201ENSMUST00000094866 3513 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
ShhQ62226 Olfr916-203ENSMUST00000214093 3685 ntAPPRIS P1 TSL 3 BASIC3.67□□□□□ -1.82
ShhQ62226 Olfr642-202ENSMUST00000214299 4715 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
ShhQ62226 Gm37970-201ENSMUST00000193865 1732 ntBASIC3.67□□□□□ -1.82
ShhQ62226 Olfr1356-202ENSMUST00000205100 3023 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
ShhQ62226 Mcmdc2-204ENSMUST00000140948 3249 ntTSL 5 BASIC3.66□□□□□ -1.82
ShhQ62226 Igkv5-45-201ENSMUST00000103366 385 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
ShhQ62226 Gm13268-201ENSMUST00000117485 433 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Rpl35-ps1-201ENSMUST00000118070 372 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Defa-ps9-201ENSMUST00000118264 276 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Gm14627-201ENSMUST00000118931 567 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Gm11598-201ENSMUST00000119257 357 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Gm14364-201ENSMUST00000129209 267 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Gm22320-201ENSMUST00000157149 312 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Gm25438-201ENSMUST00000158281 110 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Vmn1r77-201ENSMUST00000164446 921 ntAPPRIS P2 BASIC3.66□□□□□ -1.82
ShhQ62226 Rp31-ps19-201ENSMUST00000180929 353 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Gm26936-201ENSMUST00000182424 382 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
ShhQ62226 Gm28163-201ENSMUST00000187099 325 ntBASIC3.66□□□□□ -1.82
ShhQ62226 4930554C24Rik-201ENSMUST00000187735 1084 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
ShhQ62226 Vmn2r-ps149-201ENSMUST00000188423 590 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Gm34302-201ENSMUST00000192926 243 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
ShhQ62226 Gm36259-201ENSMUST00000197340 392 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Gm42451-201ENSMUST00000197410 244 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Gm19243-201ENSMUST00000198592 269 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Gm45533-201ENSMUST00000210295 165 ntTSL 5 BASIC3.66□□□□□ -1.82
ShhQ62226 Scoc-204ENSMUST00000212449 280 ntTSL 3 BASIC3.66□□□□□ -1.82
ShhQ62226 Olfr1086-202ENSMUST00000213198 1153 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
ShhQ62226 Gm17829-201ENSMUST00000219782 344 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Gm7240-201ENSMUST00000220769 664 ntBASIC3.66□□□□□ -1.82
ShhQ62226 Cycs-ps3-201ENSMUST00000223240 321 ntBASIC3.66□□□□□ -1.82
ShhQ62226 AC118639.1-201ENSMUST00000227204 338 ntBASIC3.66□□□□□ -1.82
ShhQ62226 AC122341.1-201ENSMUST00000227291 560 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 76,532 protein–RNA pairs in 99.4 ms