Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm23312-201ENSMUST00000158774 102 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 2010005H15Rik-203ENSMUST00000187742 466 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Ms4a4a-201ENSMUST00000188995 836 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Gm28779-201ENSMUST00000189678 323 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Gm19777-201ENSMUST00000191940 358 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Gm37353-201ENSMUST00000194497 313 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Mirlet7f-1-201ENSMUST00000198652 89 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Gm44371-201ENSMUST00000204148 467 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Gm44092-201ENSMUST00000204470 258 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Gm7948-201ENSMUST00000212607 844 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Gm9068-201ENSMUST00000217393 455 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 AC140785.1-201ENSMUST00000217782 383 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 AC152062.1-201ENSMUST00000218129 386 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 AC155634.2-201ENSMUST00000222001 489 ntTSL 3 BASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Gm35558-203ENSMUST00000222264 204 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 CT010506.2-201ENSMUST00000225618 183 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 AC165366.1-201ENSMUST00000225905 505 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 AC157772.2-201ENSMUST00000228202 259 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 AC117202.3-201ENSMUST00000228532 310 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Snord38a-201ENSMUST00000083746 71 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Olfr365-203ENSMUST00000218602 5374 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 CT009510.2-203ENSMUST00000226704 2136 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Olfr642-202ENSMUST00000214299 4715 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 AC104897.1-201ENSMUST00000222638 3628 ntBASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Gm9921-201ENSMUST00000173293 4399 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Olfr1484-204ENSMUST00000216014 3842 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Gm15097-202ENSMUST00000112741 1953 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
Ddb1Q3U1J4 Gm42552-201ENSMUST00000196754 4497 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Olfr799-202ENSMUST00000213820 1627 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Olfr125-202ENSMUST00000213857 3835 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Ifi203-203ENSMUST00000123708 3482 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Neurod4-201ENSMUST00000061571 3345 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 n-R5s31-201ENSMUST00000104162 110 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Atp5j-203ENSMUST00000114193 680 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Gm14359-201ENSMUST00000118883 424 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Gm13804-201ENSMUST00000119552 172 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Gm9498-201ENSMUST00000140849 291 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Gm17538-201ENSMUST00000168236 327 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Gm17103-201ENSMUST00000168897 549 ntTSL 3 BASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Pcgf1-204ENSMUST00000176089 492 ntTSL 5 BASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Gm21028-201ENSMUST00000179470 123 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Ranbp2-ps2-201ENSMUST00000184379 370 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Gm43505-201ENSMUST00000200579 139 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Igkv13-74-1-201ENSMUST00000200611 242 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Gm7624-201ENSMUST00000209702 435 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Gm45498-201ENSMUST00000210346 283 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Rpl26-ps6-201ENSMUST00000216693 434 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Gm4921-201ENSMUST00000219804 992 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Gm8785-201ENSMUST00000220259 487 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Gm34662-201ENSMUST00000220502 215 ntTSL 3 BASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 CT009604.2-201ENSMUST00000225531 377 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 AC118639.1-204ENSMUST00000226401 694 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 AC144819.1-201ENSMUST00000227015 620 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Olfr138-201ENSMUST00000071871 939 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Tas2r115-201ENSMUST00000095394 1033 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Rbm31y-201ENSMUST00000179408 1955 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Gm21379-201ENSMUST00000179772 1955 ntBASIC4.72□□□□□ -1.65
Ddb1Q3U1J4 Vmn1r80-204ENSMUST00000227471 6368 ntBASIC4.71□□□□□ -1.65
Ddb1Q3U1J4 Fsd1l-203ENSMUST00000132151 7467 ntAPPRIS P2 TSL 5 BASIC4.71□□□□□ -1.65
Ddb1Q3U1J4 Gm44601-201ENSMUST00000206678 2720 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Gm38265-201ENSMUST00000193479 3766 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Vwc2l-203ENSMUST00000161937 4323 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Ccr9-205ENSMUST00000180093 4239 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Mir667-201ENSMUST00000102441 92 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Sult2a-ps3-201ENSMUST00000117899 428 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Gm13831-201ENSMUST00000118764 302 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Gm14392-201ENSMUST00000120332 401 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Gm14428-201ENSMUST00000120408 822 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Rgs2-204ENSMUST00000153527 588 ntTSL 2 BASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Gm22563-201ENSMUST00000157333 269 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Gm25606-201ENSMUST00000158363 95 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Gm23473-201ENSMUST00000158883 116 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Gm9071-201ENSMUST00000165915 474 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Pate1-201ENSMUST00000170021 389 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Mir3066-201ENSMUST00000175296 83 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Gm22631-201ENSMUST00000179656 94 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Snhg5-202ENSMUST00000182232 781 ntTSL 2 BASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 1700067G17Rik-201ENSMUST00000186180 603 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Gm28069-201ENSMUST00000189926 214 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Gm37698-201ENSMUST00000192605 463 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Gm9227-201ENSMUST00000194733 566 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Igkv2-105-201ENSMUST00000196931 377 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Gm5034-201ENSMUST00000199115 634 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Gm43440-201ENSMUST00000201957 729 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Olfr1401-ps1-201ENSMUST00000202296 211 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Gm37797-201ENSMUST00000212114 815 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Gm45735-201ENSMUST00000212779 319 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 9330159F19Rik-202ENSMUST00000213489 2992 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 AC152946.2-201ENSMUST00000219071 337 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 AC147633.1-201ENSMUST00000225134 259 ntBASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Neb-202ENSMUST00000036934 22489 ntAPPRIS P2 TSL 5 BASIC4.71□□□□□ -1.66
Ddb1Q3U1J4 Tenm1-203ENSMUST00000115059 12879 ntAPPRIS P2 TSL 1 (best) BASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Gm20619-201ENSMUST00000175814 2008 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 9330132A10Rik-201ENSMUST00000059118 3727 ntBASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Nlrp4c-201ENSMUST00000037728 3615 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Gm15356-201ENSMUST00000140669 2741 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Nebl-206ENSMUST00000131957 1709 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Olfr1001-ps1-201ENSMUST00000121340 945 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Mir1898-201ENSMUST00000122643 83 ntBASIC4.7□□□□□ -1.66
Ddb1Q3U1J4 Gm26348-201ENSMUST00000157528 240 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 76,532 protein–RNA pairs in 88.2 ms