Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm11842-201ENSMUST00000130117 556 ntTSL 5 BASIC3.7□□□□□ -1.82
ShhQ62226 Gm14271-201ENSMUST00000137886 630 ntTSL 3 BASIC3.7□□□□□ -1.82
ShhQ62226 Crem-231ENSMUST00000152108 654 ntTSL 5 BASIC3.7□□□□□ -1.82
ShhQ62226 4930401O12Rik-201ENSMUST00000153175 841 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ShhQ62226 Gm23957-201ENSMUST00000157209 90 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Gm21788-201ENSMUST00000177878 543 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
ShhQ62226 Mir7093-201ENSMUST00000184195 101 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Gm27190-201ENSMUST00000184890 542 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Gm28843-201ENSMUST00000189198 678 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Gm29546-201ENSMUST00000191171 678 ntBASIC3.7□□□□□ -1.82
ShhQ62226 1700020G17Rik-204ENSMUST00000191429 622 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ShhQ62226 Med7-201ENSMUST00000020665 1193 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ShhQ62226 Gm19366-201ENSMUST00000206996 156 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Gm33501-202ENSMUST00000209983 706 ntTSL 5 BASIC3.7□□□□□ -1.82
ShhQ62226 Gm18696-201ENSMUST00000220103 274 ntBASIC3.7□□□□□ -1.82
ShhQ62226 AC121966.1-201ENSMUST00000221458 282 ntBASIC3.7□□□□□ -1.82
ShhQ62226 AC165366.1-201ENSMUST00000225905 505 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
ShhQ62226 AL590614.1-201ENSMUST00000226037 268 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Defb19-201ENSMUST00000053180 394 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ShhQ62226 Olfr727-201ENSMUST00000079142 1035 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
ShhQ62226 Gm25792-201ENSMUST00000083289 100 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Gm24765-201ENSMUST00000083691 103 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Olfr1095-201ENSMUST00000099874 927 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
ShhQ62226 Cyp3a44-201ENSMUST00000067479 1962 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ShhQ62226 Olfr822-202ENSMUST00000216879 2663 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
ShhQ62226 AC124572.2-201ENSMUST00000218041 5152 ntBASIC3.7□□□□□ -1.82
ShhQ62226 Cp-201ENSMUST00000003714 4092 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
ShhQ62226 D3Ertd254e-201ENSMUST00000165956 6503 ntTSL 3 BASIC3.7□□□□□ -1.82
ShhQ62226 P2ry10-201ENSMUST00000053375 2888 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
ShhQ62226 Vmn1r89-202ENSMUST00000226717 4120 ntAPPRIS P2 BASIC3.69□□□□□ -1.82
ShhQ62226 Gm37211-201ENSMUST00000193392 3433 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Cd200r3-209ENSMUST00000166731 3876 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
ShhQ62226 6720427I07Rik-201ENSMUST00000181490 2300 ntBASIC3.69□□□□□ -1.82
ShhQ62226 AC154481.2-201ENSMUST00000222526 3175 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Gm14015-201ENSMUST00000130634 3949 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
ShhQ62226 Trav8d-2-201ENSMUST00000103605 334 ntAPPRIS ALT2 BASIC3.69□□□□□ -1.82
ShhQ62226 Gm11813-201ENSMUST00000118586 291 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Gm12053-201ENSMUST00000119022 252 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Gm6797-201ENSMUST00000119440 512 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Gm14586-201ENSMUST00000119571 408 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Gm22452-201ENSMUST00000122804 104 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Gm23435-201ENSMUST00000157183 156 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Gm26028-201ENSMUST00000158660 294 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Cylc2-203ENSMUST00000166749 1297 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
ShhQ62226 Mir3964-201ENSMUST00000174898 74 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Gm7497-201ENSMUST00000183064 1003 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Gm37239-201ENSMUST00000193510 141 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Trbv8-201ENSMUST00000194020 285 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Gm8747-201ENSMUST00000195392 751 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Ranbp2-ps12-201ENSMUST00000197110 386 ntBASIC3.69□□□□□ -1.82
ShhQ62226 1700011C11Rik-201ENSMUST00000205268 365 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
ShhQ62226 Gm8745-201ENSMUST00000207846 782 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Gm45245-201ENSMUST00000210082 376 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Gm36243-201ENSMUST00000211546 610 ntTSL 3 BASIC3.69□□□□□ -1.82
ShhQ62226 AC132384.9-201ENSMUST00000218085 277 ntBASIC3.69□□□□□ -1.82
ShhQ62226 AC122317.1-201ENSMUST00000218404 708 ntTSL 5 BASIC3.69□□□□□ -1.82
ShhQ62226 AC127270.2-201ENSMUST00000221337 247 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Gm16368-201ENSMUST00000222340 435 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
ShhQ62226 AC123656.2-201ENSMUST00000226726 227 ntBASIC3.69□□□□□ -1.82
ShhQ62226 CT025536.1-201ENSMUST00000226744 844 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Olfr747-201ENSMUST00000078075 955 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
ShhQ62226 Olfr295-201ENSMUST00000078447 930 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
ShhQ62226 Gm7381-201ENSMUST00000098958 300 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Skint4-202ENSMUST00000106564 3997 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
ShhQ62226 Skint4-204ENSMUST00000106566 3997 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
ShhQ62226 Fam46d-204ENSMUST00000167154 3004 ntAPPRIS P1 TSL 3 BASIC3.69□□□□□ -1.82
ShhQ62226 B230334C09Rik-201ENSMUST00000200255 8927 ntBASIC3.69□□□□□ -1.82
ShhQ62226 Csmd3-201ENSMUST00000100670 13022 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
ShhQ62226 Vmn1r46-204ENSMUST00000228231 13338 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
ShhQ62226 Gm4567-202ENSMUST00000190554 1581 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
ShhQ62226 Gm10668-202ENSMUST00000191073 1581 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
ShhQ62226 Gm37868-201ENSMUST00000195578 2735 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm7957-201ENSMUST00000207404 2602 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Nlrp2-201ENSMUST00000045022 3404 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
ShhQ62226 Olfr64-201ENSMUST00000081748 5001 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
ShhQ62226 AC153150.1-201ENSMUST00000226065 3782 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm14062-201ENSMUST00000134795 4134 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
ShhQ62226 Gm29221-201ENSMUST00000186092 2894 ntTSL 5 BASIC3.68□□□□□ -1.82
ShhQ62226 Gm23577-201ENSMUST00000103950 110 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm22472-201ENSMUST00000104115 134 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm14282-201ENSMUST00000119484 240 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm7071-201ENSMUST00000120458 462 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Sval2-201ENSMUST00000014248 585 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
ShhQ62226 Gm12534-201ENSMUST00000147691 469 ntTSL 3 BASIC3.68□□□□□ -1.82
ShhQ62226 Gm23540-201ENSMUST00000157543 164 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm23755-201ENSMUST00000157578 343 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm23078-201ENSMUST00000157848 148 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm25434-201ENSMUST00000158278 167 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm22840-201ENSMUST00000158444 136 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Il1rl1-205ENSMUST00000174335 1216 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
ShhQ62226 Gm22120-201ENSMUST00000175590 70 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm24100-201ENSMUST00000178592 79 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm24137-201ENSMUST00000180055 79 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Gm22391-201ENSMUST00000180356 79 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Scgb2b17-203ENSMUST00000182673 434 ntAPPRIS P2 TSL 2 BASIC3.68□□□□□ -1.82
ShhQ62226 Scgb2b15-201ENSMUST00000182975 434 ntAPPRIS P1 TSL 2 BASIC3.68□□□□□ -1.82
ShhQ62226 Mir7578-201ENSMUST00000183455 82 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Mir7014-201ENSMUST00000183853 63 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Mir6993-201ENSMUST00000184912 65 ntBASIC3.68□□□□□ -1.82
ShhQ62226 Sumo1-203ENSMUST00000185265 532 ntTSL 3 BASIC3.68□□□□□ -1.82
Retrieved 100 of 76,532 protein–RNA pairs in 131.4 ms