Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Mir6352-201ENSMUST00000184495 116 ntBASIC3.35□□□□□ -1.87
Ccdc88bQ4QRL3 A430103D13Rik-201ENSMUST00000220077 857 ntBASIC3.35□□□□□ -1.87
Ccdc88bQ4QRL3 Vmn2r69-201ENSMUST00000171213 2553 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
Ccdc88bQ4QRL3 Gm13470-201ENSMUST00000123911 421 ntTSL 2 BASIC3.34□□□□□ -1.88
Ccdc88bQ4QRL3 Gm24900-201ENSMUST00000158128 134 ntBASIC3.34□□□□□ -1.88
Ccdc88bQ4QRL3 Mir9-3-201ENSMUST00000175497 90 ntBASIC3.34□□□□□ -1.88
Ccdc88bQ4QRL3 Il6st-204ENSMUST00000183829 612 ntTSL 5 BASIC3.34□□□□□ -1.88
Ccdc88bQ4QRL3 Gm28404-201ENSMUST00000190242 453 ntBASIC3.34□□□□□ -1.88
Ccdc88bQ4QRL3 Olfr500-ps1-201ENSMUST00000208818 933 ntBASIC3.34□□□□□ -1.88
Ccdc88bQ4QRL3 AC161250.1-201ENSMUST00000213426 1111 ntBASIC3.34□□□□□ -1.88
Ccdc88bQ4QRL3 AC153532.1-201ENSMUST00000218126 1111 ntBASIC3.34□□□□□ -1.88
Ccdc88bQ4QRL3 AC155634.2-201ENSMUST00000222001 489 ntTSL 3 BASIC3.34□□□□□ -1.88
Ccdc88bQ4QRL3 AC129085.5-201ENSMUST00000225468 400 ntBASIC3.34□□□□□ -1.88
Ccdc88bQ4QRL3 Olfr1101-201ENSMUST00000099870 933 ntAPPRIS P1 BASIC3.34□□□□□ -1.88
Ccdc88bQ4QRL3 Uty-201ENSMUST00000069309 5208 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
Ccdc88bQ4QRL3 Gm45130-201ENSMUST00000207574 3388 ntBASIC3.33□□□□□ -1.88
Ccdc88bQ4QRL3 Zfp160-201ENSMUST00000088811 3791 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
Ccdc88bQ4QRL3 Gm13432-201ENSMUST00000118861 241 ntBASIC3.33□□□□□ -1.88
Ccdc88bQ4QRL3 Gm8356-203ENSMUST00000178896 615 ntTSL 5 BASIC3.33□□□□□ -1.88
Ccdc88bQ4QRL3 Mir301b-201ENSMUST00000102333 97 ntBASIC3.32□□□□□ -1.88
Ccdc88bQ4QRL3 Defa-ps8-201ENSMUST00000120972 279 ntBASIC3.32□□□□□ -1.88
Ccdc88bQ4QRL3 Gm14229-201ENSMUST00000121178 850 ntBASIC3.32□□□□□ -1.88
Ccdc88bQ4QRL3 Gm15157-201ENSMUST00000121852 702 ntBASIC3.32□□□□□ -1.88
Ccdc88bQ4QRL3 Gm23702-201ENSMUST00000158840 130 ntBASIC3.32□□□□□ -1.88
Ccdc88bQ4QRL3 Gm15900-201ENSMUST00000161584 342 ntBASIC3.32□□□□□ -1.88
Ccdc88bQ4QRL3 Gm5916-201ENSMUST00000168452 1142 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
Ccdc88bQ4QRL3 Gm27894-201ENSMUST00000184177 92 ntBASIC3.32□□□□□ -1.88
Ccdc88bQ4QRL3 Gm19193-201ENSMUST00000190263 590 ntBASIC3.32□□□□□ -1.88
Ccdc88bQ4QRL3 Ighv1-23-201ENSMUST00000194625 351 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
Ccdc88bQ4QRL3 Gm43562-201ENSMUST00000196439 238 ntTSL 3 BASIC3.32□□□□□ -1.88
Ccdc88bQ4QRL3 Vmn1r-ps5-201ENSMUST00000202963 931 ntBASIC3.32□□□□□ -1.88
Ccdc88bQ4QRL3 AC121286.1-201ENSMUST00000218811 380 ntTSL 3 BASIC3.32□□□□□ -1.88
Ccdc88bQ4QRL3 Olfr344-201ENSMUST00000075474 930 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
Ccdc88bQ4QRL3 Gm22683-201ENSMUST00000082854 137 ntBASIC3.32□□□□□ -1.88
Ccdc88bQ4QRL3 Gm42967-201ENSMUST00000198647 2312 ntBASIC3.31□□□□□ -1.88
Ccdc88bQ4QRL3 Igkv4-61-201ENSMUST00000103353 284 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
Ccdc88bQ4QRL3 Gm23179-201ENSMUST00000158693 304 ntBASIC3.31□□□□□ -1.88
Ccdc88bQ4QRL3 Olfr1218-202ENSMUST00000213609 3760 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
Ccdc88bQ4QRL3 Muc16-204ENSMUST00000208663 25437 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
Ccdc88bQ4QRL3 Gm26080-201ENSMUST00000104069 131 ntBASIC3.3□□□□□ -1.88
Ccdc88bQ4QRL3 Arpp19-211ENSMUST00000170310 899 ntTSL 3 BASIC3.3□□□□□ -1.88
Ccdc88bQ4QRL3 Gm43848-201ENSMUST00000198060 1247 ntBASIC3.3□□□□□ -1.88
Ccdc88bQ4QRL3 Gm43239-201ENSMUST00000200131 201 ntBASIC3.3□□□□□ -1.88
Ccdc88bQ4QRL3 Vmn1r68-201ENSMUST00000058362 960 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
Ccdc88bQ4QRL3 Gm5670-201ENSMUST00000093546 372 ntBASIC3.3□□□□□ -1.88
Ccdc88bQ4QRL3 Gm10730-201ENSMUST00000194097 2723 ntBASIC3.3□□□□□ -1.88
Ccdc88bQ4QRL3 Gm773-201ENSMUST00000101561 951 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
Ccdc88bQ4QRL3 Gm11430-201ENSMUST00000121317 217 ntBASIC3.29□□□□□ -1.88
Ccdc88bQ4QRL3 Gm13868-201ENSMUST00000122411 294 ntBASIC3.29□□□□□ -1.88
Ccdc88bQ4QRL3 n-R5s150-201ENSMUST00000122705 108 ntBASIC3.29□□□□□ -1.88
Ccdc88bQ4QRL3 Gm20648-201ENSMUST00000175815 328 ntBASIC3.29□□□□□ -1.88
Ccdc88bQ4QRL3 Gm27326-201ENSMUST00000183504 95 ntBASIC3.29□□□□□ -1.88
Ccdc88bQ4QRL3 Gm44425-201ENSMUST00000203739 429 ntBASIC3.29□□□□□ -1.88
Ccdc88bQ4QRL3 AC122194.1-201ENSMUST00000220549 293 ntBASIC3.29□□□□□ -1.88
Ccdc88bQ4QRL3 Ube2v2-201ENSMUST00000096234 609 ntTSL 3 BASIC3.29□□□□□ -1.88
Ccdc88bQ4QRL3 Agmo-201ENSMUST00000049874 2423 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
Ccdc88bQ4QRL3 Zfp966-201ENSMUST00000108949 2939 ntAPPRIS P1 TSL 3 BASIC3.29□□□□□ -1.88
Ccdc88bQ4QRL3 Gm25496-201ENSMUST00000104430 120 ntBASIC3.28□□□□□ -1.88
Ccdc88bQ4QRL3 Gm7039-201ENSMUST00000205138 346 ntBASIC3.28□□□□□ -1.88
Ccdc88bQ4QRL3 Gm45639-201ENSMUST00000211205 710 ntTSL 5 BASIC3.28□□□□□ -1.88
Ccdc88bQ4QRL3 Gm7984-201ENSMUST00000060640 538 ntBASIC3.28□□□□□ -1.88
Ccdc88bQ4QRL3 Gm37061-201ENSMUST00000195066 3243 ntBASIC3.28□□□□□ -1.88
Ccdc88bQ4QRL3 Zfp638-212ENSMUST00000203891 3968 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
Ccdc88bQ4QRL3 Gm26082-201ENSMUST00000104070 127 ntBASIC3.28□□□□□ -1.88
Ccdc88bQ4QRL3 Mir3968-201ENSMUST00000175355 100 ntBASIC3.28□□□□□ -1.88
Ccdc88bQ4QRL3 Trav15d-3-201ENSMUST00000198604 167 ntBASIC3.28□□□□□ -1.88
Ccdc88bQ4QRL3 Trav15n-3-201ENSMUST00000200498 168 ntBASIC3.28□□□□□ -1.88
Ccdc88bQ4QRL3 Vmn1r21-201ENSMUST00000203310 1779 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
Ccdc88bQ4QRL3 Gm12721-201ENSMUST00000120621 268 ntBASIC3.27□□□□□ -1.89
Ccdc88bQ4QRL3 Gm28794-201ENSMUST00000185276 136 ntBASIC3.27□□□□□ -1.89
Ccdc88bQ4QRL3 Gm44533-201ENSMUST00000207782 268 ntBASIC3.27□□□□□ -1.89
Ccdc88bQ4QRL3 4930520P13Rik-201ENSMUST00000222622 505 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
Ccdc88bQ4QRL3 AC159263.3-201ENSMUST00000223434 460 ntBASIC3.27□□□□□ -1.89
Ccdc88bQ4QRL3 AC130823.2-201ENSMUST00000226169 290 ntBASIC3.27□□□□□ -1.89
Ccdc88bQ4QRL3 Tas2r130-201ENSMUST00000067597 1090 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
Ccdc88bQ4QRL3 Olfr810-202ENSMUST00000214206 4809 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
Ccdc88bQ4QRL3 Gm17177-201ENSMUST00000169144 483 ntBASIC3.26□□□□□ -1.89
Ccdc88bQ4QRL3 Vmn1r25-201ENSMUST00000176572 1101 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
Ccdc88bQ4QRL3 Mir7016-201ENSMUST00000184308 72 ntBASIC3.26□□□□□ -1.89
Ccdc88bQ4QRL3 Gm38214-201ENSMUST00000192581 988 ntBASIC3.26□□□□□ -1.89
Ccdc88bQ4QRL3 Gm44938-201ENSMUST00000208614 427 ntBASIC3.26□□□□□ -1.89
Ccdc88bQ4QRL3 Olfr589-202ENSMUST00000218483 966 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
Ccdc88bQ4QRL3 Gm30239-202ENSMUST00000223193 631 ntTSL 5 BASIC3.26□□□□□ -1.89
Ccdc88bQ4QRL3 Olfr589-201ENSMUST00000061055 954 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
Ccdc88bQ4QRL3 Gm24261-201ENSMUST00000083744 104 ntBASIC3.26□□□□□ -1.89
Ccdc88bQ4QRL3 Olfr52-201ENSMUST00000099905 960 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
Ccdc88bQ4QRL3 Skint5-202ENSMUST00000169631 4497 ntAPPRIS P5 TSL 1 (best) BASIC3.26□□□□□ -1.89
Ccdc88bQ4QRL3 Gulp1-206ENSMUST00000162600 2798 ntTSL 5 BASIC3.25□□□□□ -1.89
Ccdc88bQ4QRL3 Gm13419-201ENSMUST00000121711 271 ntBASIC3.25□□□□□ -1.89
Ccdc88bQ4QRL3 Gm21991-201ENSMUST00000180006 508 ntBASIC3.25□□□□□ -1.89
Ccdc88bQ4QRL3 AC129202.2-201ENSMUST00000225123 177 ntBASIC3.25□□□□□ -1.89
Ccdc88bQ4QRL3 AC117814.1-201ENSMUST00000226135 352 ntBASIC3.25□□□□□ -1.89
Ccdc88bQ4QRL3 Gm42537-201ENSMUST00000198260 2574 ntBASIC3.25□□□□□ -1.89
Ccdc88bQ4QRL3 Zfp960-201ENSMUST00000127027 2667 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
Ccdc88bQ4QRL3 Olfr715-202ENSMUST00000214919 5114 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
Ccdc88bQ4QRL3 Gm43718-201ENSMUST00000197524 1857 ntBASIC3.24□□□□□ -1.89
Ccdc88bQ4QRL3 Csnka2ip-201ENSMUST00000089279 1336 ntAPPRIS P2 BASIC3.24□□□□□ -1.89
Ccdc88bQ4QRL3 Gm23467-201ENSMUST00000157127 159 ntBASIC3.24□□□□□ -1.89
Ccdc88bQ4QRL3 Gm28076-201ENSMUST00000188337 410 ntTSL 3 BASIC3.24□□□□□ -1.89
Ccdc88bQ4QRL3 Gm28060-201ENSMUST00000191554 189 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 76,532 protein–RNA pairs in 81.1 ms