Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm11429-201ENSMUST00000119089 144 ntBASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm12890-201ENSMUST00000120885 373 ntBASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm26275-201ENSMUST00000157101 268 ntBASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm25342-201ENSMUST00000157459 122 ntBASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm24940-201ENSMUST00000158326 108 ntBASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm7582-201ENSMUST00000160831 603 ntBASIC5.59□□□□□ -1.51
Rnf40Q3U319 4930473D10Rik-201ENSMUST00000161975 487 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
Rnf40Q3U319 Mir6992-201ENSMUST00000183342 109 ntBASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm28660-201ENSMUST00000186496 253 ntBASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm29005-201ENSMUST00000186773 320 ntBASIC5.59□□□□□ -1.51
Rnf40Q3U319 Mrgprb1-203ENSMUST00000188918 435 ntTSL 3 BASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm30341-201ENSMUST00000194363 289 ntBASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm45083-201ENSMUST00000205216 712 ntTSL 3 BASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm23650-201ENSMUST00000083355 70 ntBASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm23039-201ENSMUST00000083870 161 ntBASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm44822-201ENSMUST00000208559 6389 ntBASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm45304-201ENSMUST00000210303 2828 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm37971-201ENSMUST00000193516 3391 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm45792-201ENSMUST00000207795 4268 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
Rnf40Q3U319 Slco1a5-203ENSMUST00000111825 2586 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
Rnf40Q3U319 F830112A20Rik-201ENSMUST00000194249 3552 ntBASIC5.59□□□□□ -1.52
Rnf40Q3U319 Gm32061-201ENSMUST00000207232 3478 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Galnt1-208ENSMUST00000178605 3796 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Rev3l-207ENSMUST00000164763 10399 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Pum2-210ENSMUST00000169089 3295 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Rbm41-202ENSMUST00000087400 2229 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Rnf128-202ENSMUST00000113027 2641 ntTSL 5 BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Stard9-207ENSMUST00000180041 15102 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Vmn2r112-201ENSMUST00000097381 2574 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Mir680-3-201ENSMUST00000102298 87 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gm15772-201ENSMUST00000118533 438 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gm11774-201ENSMUST00000118601 293 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gm12884-201ENSMUST00000120371 325 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gm13419-201ENSMUST00000121711 271 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 Saxo1os-201ENSMUST00000131790 628 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gm12963-203ENSMUST00000156271 388 ntTSL 5 BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gm24015-201ENSMUST00000157725 232 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 Rpl26-ps4-201ENSMUST00000170279 438 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gm20203-201ENSMUST00000192352 332 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gm42830-201ENSMUST00000196642 313 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gm44360-201ENSMUST00000200081 82 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gm43233-201ENSMUST00000200491 616 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 AC161256.1-201ENSMUST00000217312 213 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gnrh1-203ENSMUST00000223951 411 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Lelp1-201ENSMUST00000029535 857 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gm23737-201ENSMUST00000082547 159 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gm22807-201ENSMUST00000082737 129 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 Olfr1383-202ENSMUST00000204706 4168 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gm44801-201ENSMUST00000207644 2060 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gm4759-201ENSMUST00000183414 6622 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 AY512915-203ENSMUST00000159937 3650 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Rmi1-204ENSMUST00000225815 2447 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Vmn1r189-203ENSMUST00000228428 3231 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Olfr1438-ps1-201ENSMUST00000208398 4761 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Pum2-201ENSMUST00000020915 3587 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Slc22a22-202ENSMUST00000110196 2368 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gm21940-201ENSMUST00000204940 2278 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 Olfr701-203ENSMUST00000217739 4100 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
Rnf40Q3U319 Gm37558-201ENSMUST00000193684 2983 ntBASIC5.58□□□□□ -1.52
Rnf40Q3U319 AC154640.4-201ENSMUST00000226647 4640 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 Vmn2r1-201ENSMUST00000029406 2739 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
Rnf40Q3U319 Gm43834-201ENSMUST00000197097 4830 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 Igkv6-20-201ENSMUST00000103388 375 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
Rnf40Q3U319 Traj18-201ENSMUST00000103723 66 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
Rnf40Q3U319 Traj7-201ENSMUST00000103733 59 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
Rnf40Q3U319 Gm14018-201ENSMUST00000119042 455 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 Smyd1-204ENSMUST00000129630 376 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
Rnf40Q3U319 Gm16019-201ENSMUST00000149538 261 ntTSL 5 BASIC5.57□□□□□ -1.52
Rnf40Q3U319 Gm23781-201ENSMUST00000157940 308 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 Gm17186-201ENSMUST00000171742 456 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 Gm17166-201ENSMUST00000172006 431 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 Gm22699-201ENSMUST00000175376 105 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 Trav14n-1-201ENSMUST00000177578 340 ntAPPRIS ALT2 BASIC5.57□□□□□ -1.52
Rnf40Q3U319 Gm23450-201ENSMUST00000178285 91 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 Gm25457-201ENSMUST00000179509 107 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 Trav14d-1-202ENSMUST00000187138 340 ntAPPRIS ALT2 BASIC5.57□□□□□ -1.52
Rnf40Q3U319 Scgb2b16-ps-201ENSMUST00000188720 333 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 4930519L02Rik-202ENSMUST00000200254 452 ntTSL 3 BASIC5.57□□□□□ -1.52
Rnf40Q3U319 Gm43309-201ENSMUST00000200837 458 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 Gm43688-201ENSMUST00000202249 310 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
Rnf40Q3U319 Gm44073-201ENSMUST00000204173 429 ntTSL 3 BASIC5.57□□□□□ -1.52
Rnf40Q3U319 Gm44208-201ENSMUST00000205199 421 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 AC164567.4-201ENSMUST00000219708 483 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 AC154626.1-201ENSMUST00000226070 311 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 Gm6462-201ENSMUST00000081488 304 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 Mir146-201ENSMUST00000083667 65 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 AC131329.1-201ENSMUST00000221204 3487 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 Meis1-206ENSMUST00000144988 7553 ntTSL 2 BASIC5.57□□□□□ -1.52
Rnf40Q3U319 Zfp975-201ENSMUST00000107992 3148 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
Rnf40Q3U319 Lrrtm4-202ENSMUST00000126005 3733 ntTSL 5 BASIC5.57□□□□□ -1.52
Rnf40Q3U319 Angpt1-201ENSMUST00000022921 4260 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
Rnf40Q3U319 Gm37053-201ENSMUST00000192399 2087 ntBASIC5.57□□□□□ -1.52
Rnf40Q3U319 Olfr598-202ENSMUST00000214765 2026 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
Rnf40Q3U319 Vmn1r171-203ENSMUST00000226321 3067 ntAPPRIS ALT2 BASIC5.56□□□□□ -1.52
Rnf40Q3U319 Olfr1120-202ENSMUST00000215163 4404 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
Rnf40Q3U319 Ireb2-201ENSMUST00000034843 5770 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
Rnf40Q3U319 Slc22a27-201ENSMUST00000075619 2152 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
Rnf40Q3U319 Zfhx4-205ENSMUST00000176383 13500 ntAPPRIS P2 TSL 5 BASIC5.56□□□□□ -1.52
Rnf40Q3U319 Mmp8-201ENSMUST00000018765 2425 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
Rnf40Q3U319 Olfr147-202ENSMUST00000214648 5356 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
Retrieved 100 of 76,532 protein–RNA pairs in 94.9 ms