Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 CT025660.1-201ENSMUST00000216094 457 ntTSL 5 BASIC5.62□□□□□ -1.51
Rnf40Q3U319 AC156798.1-201ENSMUST00000220508 224 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 AC173345.2-201ENSMUST00000222795 153 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 AC183092.1-201ENSMUST00000224301 153 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 AC164304.1-201ENSMUST00000226920 272 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 AC137902.1-201ENSMUST00000228184 102 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 CT485608.1-201ENSMUST00000228759 389 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm23795-201ENSMUST00000084006 137 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Clca4c-ps-202ENSMUST00000200595 2779 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 AC112274.1-201ENSMUST00000218957 4274 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm38125-201ENSMUST00000194136 3438 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm3239-201ENSMUST00000163525 1751 ntAPPRIS P5 TSL 5 BASIC5.62□□□□□ -1.51
Rnf40Q3U319 Dram2-201ENSMUST00000029507 1891 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm43011-201ENSMUST00000197897 4433 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm37180-201ENSMUST00000195335 2819 ntBASIC5.61□□□□□ -1.51
Rnf40Q3U319 Olfr721-ps1-203ENSMUST00000215479 3075 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Fam83b-201ENSMUST00000098546 3136 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Slco1b2-201ENSMUST00000042812 3307 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Olfr13-202ENSMUST00000216179 3677 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Lpp-202ENSMUST00000078988 15440 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Gm15262-202ENSMUST00000207320 5010 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Nfat5-202ENSMUST00000077440 12773 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Gm26293-201ENSMUST00000104170 84 ntBASIC5.61□□□□□ -1.51
Rnf40Q3U319 Gm22496-201ENSMUST00000104493 88 ntBASIC5.61□□□□□ -1.51
Rnf40Q3U319 Sult1d1-201ENSMUST00000113314 2420 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
Rnf40Q3U319 1700092C17Rik-201ENSMUST00000135792 424 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Gm12148-201ENSMUST00000153791 292 ntTSL 3 BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Mir1960-201ENSMUST00000157488 78 ntBASIC5.61□□□□□ -1.51
Rnf40Q3U319 Gm22606-201ENSMUST00000158290 103 ntBASIC5.61□□□□□ -1.51
Rnf40Q3U319 Gm23386-201ENSMUST00000158585 144 ntBASIC5.61□□□□□ -1.51
Rnf40Q3U319 Gm29282-201ENSMUST00000190720 473 ntTSL 5 BASIC5.61□□□□□ -1.51
Rnf40Q3U319 AC122844.1-201ENSMUST00000195971 107 ntBASIC5.61□□□□□ -1.51
Rnf40Q3U319 Igkv2-113-201ENSMUST00000196138 362 ntBASIC5.61□□□□□ -1.51
Rnf40Q3U319 Rpl18a-ps3-201ENSMUST00000198938 171 ntBASIC5.61□□□□□ -1.51
Rnf40Q3U319 Mir721-201ENSMUST00000200230 88 ntBASIC5.61□□□□□ -1.51
Rnf40Q3U319 Gm44371-201ENSMUST00000204148 467 ntBASIC5.61□□□□□ -1.51
Rnf40Q3U319 Gm2926-201ENSMUST00000205625 239 ntBASIC5.61□□□□□ -1.51
Rnf40Q3U319 Gm45086-201ENSMUST00000209052 462 ntTSL 5 BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Olfr1537-202ENSMUST00000213472 4114 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Olfr628-202ENSMUST00000218266 951 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Ninj2-201ENSMUST00000035244 823 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Rpl21-ps14-201ENSMUST00000080279 483 ntBASIC5.61□□□□□ -1.51
Rnf40Q3U319 Olfr1348-201ENSMUST00000086319 957 ntTSL 5 BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Zfp62-201ENSMUST00000061757 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Olfr1303-202ENSMUST00000216114 2976 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Vmn2r89-201ENSMUST00000159611 2942 ntAPPRIS P4 TSL 1 (best) BASIC5.61□□□□□ -1.51
Rnf40Q3U319 BC051076-202ENSMUST00000199477 2868 ntBASIC5.61□□□□□ -1.51
Rnf40Q3U319 Vmn1r202-202ENSMUST00000228020 5441 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
Rnf40Q3U319 Olfr441-202ENSMUST00000213649 2402 ntAPPRIS P1 TSL 3 BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Mier1-202ENSMUST00000097945 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Usp46-201ENSMUST00000068058 4557 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Olfr947-ps1-201ENSMUST00000214075 2165 ntAPPRIS P1 TSL 3 BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm20619-201ENSMUST00000175814 2008 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Rnf40Q3U319 AC115970.1-201ENSMUST00000218910 1758 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Olfr726-203ENSMUST00000213345 1728 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Vmn1r204-202ENSMUST00000228195 2936 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Trps1-202ENSMUST00000165201 9859 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Zfp607a-203ENSMUST00000205715 4031 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm37726-201ENSMUST00000193246 3886 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm15660-201ENSMUST00000118997 478 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm7308-201ENSMUST00000121087 447 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm14810-201ENSMUST00000121628 486 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm23184-201ENSMUST00000122594 131 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Bloc1s1-202ENSMUST00000131271 475 ntTSL 5 BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Eif5al3-ps-201ENSMUST00000135410 447 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm22596-201ENSMUST00000157601 316 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Mir1967-201ENSMUST00000157789 82 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm22531-201ENSMUST00000158819 140 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm16162-201ENSMUST00000162296 297 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Rp31-ps19-201ENSMUST00000180929 353 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm27535-201ENSMUST00000183814 157 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm5260-201ENSMUST00000186157 949 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm7182-201ENSMUST00000193351 732 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm43091-201ENSMUST00000198157 423 ntTSL 3 BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm44092-201ENSMUST00000204470 258 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 AC102287.1-201ENSMUST00000211412 454 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm2607-201ENSMUST00000212389 627 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 2310002D06Rik-201ENSMUST00000218103 508 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm4510-201ENSMUST00000218265 427 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 CT030242.3-201ENSMUST00000221231 581 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 AC154305.3-201ENSMUST00000224661 552 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gm23264-201ENSMUST00000083372 107 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Snora2b-201ENSMUST00000084005 137 ntBASIC5.6□□□□□ -1.51
Rnf40Q3U319 Gprc6a-202ENSMUST00000218684 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Foxr2-201ENSMUST00000096265 3210 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Vwa5a-201ENSMUST00000001544 4157 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Olfr1152-202ENSMUST00000213308 6201 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Olfr459-203ENSMUST00000214976 3770 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Olfr1323-202ENSMUST00000213463 3717 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Phkb-201ENSMUST00000053771 5351 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Cbx5-202ENSMUST00000118152 8803 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Rnf40Q3U319 Olfr685-203ENSMUST00000214712 3326 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
Rnf40Q3U319 Olfr913-201ENSMUST00000081095 2441 ntAPPRIS P1 TSL 3 BASIC5.59□□□□□ -1.51
Rnf40Q3U319 Uty-204ENSMUST00000139365 4684 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
Rnf40Q3U319 Pnpla8-204ENSMUST00000143771 2974 ntTSL 5 BASIC5.59□□□□□ -1.51
Rnf40Q3U319 Vmn1r13-202ENSMUST00000226892 5156 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm43027-201ENSMUST00000202906 3691 ntBASIC5.59□□□□□ -1.51
Rnf40Q3U319 Gm38260-201ENSMUST00000193573 3995 ntBASIC5.59□□□□□ -1.51
Rnf40Q3U319 Igkv6-23-201ENSMUST00000103386 369 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
Rnf40Q3U319 Igkv6-13-201ENSMUST00000103395 287 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
Retrieved 100 of 76,532 protein–RNA pairs in 91.7 ms